Difference between revisions of "PWY-5338"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5338 PWY-5338] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3803 TAX-38...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5338 PWY-5338] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3803 TAX-3803]
 
* common name:
 
* common name:
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** glycyl-trna_synthetase
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** galactosylcyclitol biosynthesis
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''4''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* [[RXN-8281]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 ATP[c] '''+''' 1 glycine[c] '''+''' 1 a tRNAgly[c] '''=>''' 1 diphosphate[c] '''+''' 1 a glycyl-[tRNAgly][c] '''+''' 1 AMP[c]
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*** [[Tiso_gene_6124]]
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*** [[Tiso_gene_18559]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_3788]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8277 RXN-8277]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8278 RXN-8278]
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8279 RXN-8279]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14742]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14743]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-3803}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
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{{#set: common name=galactosylcyclitol biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
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{{#set: total reaction=4}}
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* UNIPROT:
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/P41250 P41250]
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** [http://www.uniprot.org/uniprot/P54380 P54380]
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** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
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** [http://www.uniprot.org/uniprot/P43822 P43822]
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** [http://www.uniprot.org/uniprot/P54381 P54381]
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** [http://www.uniprot.org/uniprot/O51344 O51344]
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** [http://www.uniprot.org/uniprot/Q46371 Q46371]
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** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
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** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
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** [http://www.uniprot.org/uniprot/P43821 P43821]
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** [http://www.uniprot.org/uniprot/O83678 O83678]
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** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
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** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
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** [http://www.uniprot.org/uniprot/P56454 P56454]
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** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
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** [http://www.uniprot.org/uniprot/Q57681 Q57681]
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** [http://www.uniprot.org/uniprot/P67029 P67029]
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** [http://www.uniprot.org/uniprot/O67081 O67081]
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** [http://www.uniprot.org/uniprot/O67898 O67898]
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** [http://www.uniprot.org/uniprot/O59235 O59235]
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** [http://www.uniprot.org/uniprot/P47493 P47493]
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** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
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** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
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** [http://www.uniprot.org/uniprot/P56453 P56453]
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** [http://www.uniprot.org/uniprot/O27874 O27874]
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** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
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** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
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** [http://www.uniprot.org/uniprot/P38088 P38088]
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** [http://www.uniprot.org/uniprot/Q06817 Q06817]
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** [http://www.uniprot.org/uniprot/Q51114 Q51114]
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** [http://www.uniprot.org/uniprot/P75425 P75425]
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** [http://www.uniprot.org/uniprot/Q55716 Q55716]
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** [http://www.uniprot.org/uniprot/P00960 P00960]
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** [http://www.uniprot.org/uniprot/P00961 P00961]
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** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glycyl-trna_synthetase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.1.1.14}}
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{{#set: gene associated=Tiso_gene_3788|Tiso_gene_14742|Tiso_gene_14743}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:12, 21 March 2018

Pathway PWY-5338

  • taxonomic range:
  • common name:
    • galactosylcyclitol biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5338&oldid=40108"