Difference between revisions of "RXN-12726"

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(Created page with "Category:Gene == Gene Tiso_gene_19719 == * right end position: ** 1625 * transcription direction: ** POSITIVE * left end position: ** 797 * centisome position: ** 38.26212...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] == * direction: ** LEFT-TO-RIGHT * common name: ** cog0031:_cysteine_synthase...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_19719 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] ==
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* right end position:
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* direction:
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** 1625
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** cog0031:_cysteine_synthase
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* left end position:
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** cysteine_synthase
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** 797
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** cysteine
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* centisome position:
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* ec number:
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** 38.262123   
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** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[ADCPT]]
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* With identifiers:
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** 1 [[CPD-678]][c] '''+''' 1 [[ACETYLSERINE]][c] '''=>''' 1 [[L-SELENOCYSTEINE]][c] '''+''' 1 [[ACET]][c] '''+''' 1 [[PROTON]][c]
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* With common name(s):
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** 1 hydrogen selenide[c] '''+''' 1 O-acetyl-L-serine[c] '''=>''' 1 L-selenocysteine[c] '''+''' 1 acetate[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_12184]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6110]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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* Reaction: [[DEPHOSPHOCOAKIN-RXN]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_7852]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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** Source: [[orthology-creinhardtii]]
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* [[COA-PWY-1]]
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* Gene: [[Tiso_gene_819]]
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* [[COA-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17043]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2283]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-6936]], seleno-amino acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: right end position=1625}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=cog0031:_cysteine_synthase}}
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{{#set: left end position=797}}
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{{#set: common name=cysteine_synthase}}
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{{#set: centisome position=38.262123    }}
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{{#set: common name=cysteine}}
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{{#set: reaction associated=ADCPT|DEPHOSPHOCOAKIN-RXN}}
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{{#set: ec number=EC-2.5.1.47}}
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{{#set: pathway associated=COA-PWY-1|COA-PWY}}
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{{#set: gene associated=Tiso_gene_12184|Tiso_gene_6110|Tiso_gene_7852|Tiso_gene_819|Tiso_gene_17043|Tiso_gene_2283}}
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{{#set: in pathway=PWY-6936}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:12, 21 March 2018

Reaction RXN-12726

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cog0031:_cysteine_synthase
    • cysteine_synthase
    • cysteine
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6936, seleno-amino acid biosynthesis: PWY-6936
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12726&oldid=40130"