Difference between revisions of "RIBOKIN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_17423 == * right end position: ** 2715 * transcription direction: ** POSITIVE * left end position: ** 528 * centisome position: ** 14.22797...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** at1g17160 ** rib...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_17423 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
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* right end position:
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* direction:
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** 2715
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ORF
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* left end position:
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** at1g17160
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** 528
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** ribokinase
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* centisome position:
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* ec number:
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** 14.227971   
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** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[RXN-15556]]
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* With identifiers:
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** 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[CPD-15318]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 α-D-ribofuranose[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 α-D-ribose 5-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17974]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18204]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_82]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_81]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7682]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-7511]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=2715}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
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{{#set: left end position=528}}
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* LIGAND-RXN:
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{{#set: centisome position=14.227971    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7511}}
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** [http://www.uniprot.org/uniprot/P44331 P44331]
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** [http://www.uniprot.org/uniprot/P36945 P36945]
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** [http://www.uniprot.org/uniprot/Q57849 Q57849]
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** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
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** [http://www.uniprot.org/uniprot/P25332 P25332]
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** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
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** [http://www.uniprot.org/uniprot/O93727 O93727]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=at1g17160}}
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{{#set: common name=ribokinase}}
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{{#set: ec number=EC-2.7.1.15}}
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{{#set: gene associated=Tiso_gene_911|Tiso_gene_17974|Tiso_gene_18204|Tiso_gene_82|Tiso_gene_81|Tiso_gene_7682}}
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{{#set: in pathway=RIBOKIN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:14, 21 March 2018

Reaction RIBOKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • at1g17160
    • ribokinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 α-D-ribofuranose[c] => 1 H+[c] + 1 ADP[c] + 1 α-D-ribose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RIBOKIN-RXN&oldid=40318"