Difference between revisions of "TCA"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BIOTIN-CARBOXYL-RXN BIOTIN-CARBOXYL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** acetyl-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] ** [http://m...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BIOTIN-CARBOXYL-RXN BIOTIN-CARBOXYL-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** acetyl-_carboxylase
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** TCA cycle I (prokaryotic)
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.4.14 EC-6.3.4.14]
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* Synonym(s):
 
* Synonym(s):
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** tricarboxylic acid cycle
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** citric acid cycle
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** Krebs cycle
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** Szent-Gyorgyi-Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''10''' reactions in the full pathway
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** 1 [[BCCP-dimers]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Carboxybiotin-BCCP]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a biotinylated [BCCP dimer][c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 a carboxylated-biotinylated [BCCP dimer][c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_7965]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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* [[ACONITATEHYDR-RXN]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_13007]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
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*** [[annotation-experimental_annotation]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CITSYN-RXN]]
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== Reconstruction information  ==
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** 4 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_18030]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_9601]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_9603]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9602]]
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*** Tool: [[pathwaytools]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTARATEDEH-RXN 2OXOGLUTARATEDEH-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TCA TCA]
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* UNIPROT:
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* ARACYC:
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** [http://www.uniprot.org/uniprot/Q06862 Q06862]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=TCA TCA]
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** [http://www.uniprot.org/uniprot/O67483 O67483]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/Q58626 Q58626]
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{{#set: common name=TCA cycle I (prokaryotic)}}
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** [http://www.uniprot.org/uniprot/P43873 P43873]
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{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
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** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
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{{#set: reaction found=7}}
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** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
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{{#set: total reaction=10}}
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** [http://www.uniprot.org/uniprot/P24182 P24182]
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{{#set: completion rate=70.0}}
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** [http://www.uniprot.org/uniprot/O04983 O04983]
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** [http://www.uniprot.org/uniprot/O81273 O81273]
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** [http://www.uniprot.org/uniprot/Q42777 Q42777]
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** [http://www.uniprot.org/uniprot/Q39825 Q39825]
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** [http://www.uniprot.org/uniprot/O23960 O23960]
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** [http://www.uniprot.org/uniprot/O52602 O52602]
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** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=acetyl-_carboxylase}}
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{{#set: ec number=EC-6.3.4.14}}
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{{#set: gene associated=Tiso_gene_7965}}
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{{#set: in pathway=PWY0-1264}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:14, 21 March 2018

Pathway TCA

  • taxonomic range:
  • common name:
    • TCA cycle I (prokaryotic)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Krebs cycle
    • Szent-Gyorgyi-Krebs cycle

Reaction(s) found

7 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TCA&oldid=40378"