Difference between revisions of "CPD-13524"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** zinc_finger_fyve_dom...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13524 CPD-13524] == * smiles: ** CC(=CC=CC(C)=CCO)C=CC1(=C(C)CCCC(C)(C)1) * common name: **...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13524 CPD-13524] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** CC(=CC=CC(C)=CCO)C=CC1(=C(C)CCCC(C)(C)1)
 
* common name:
 
* common name:
−
** ORF
+
** all-trans-retinol
−
** zinc_finger_fyve_domain-containing_protein
+
* inchi key:
−
** triacylglycerol_lipase
+
** InChIKey=FPIPGXGPPPQFEQ-OVSJKPMPSA-N
−
** class_3_lipase
+
* molecular weight:
−
* ec number:
+
** 286.456   
−
** [http://enzyme.expasy.org/EC/3.1.1.3 EC-3.1.1.3]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** trans-retinol
 +
** retinol
 +
** vitamin A
 +
** vitamin A1
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[1.3.99.23-RXN]]
−
** 1 [[Dietary-retinyl-esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CPD-13524]][c] '''+''' 1 [[PROTON]][c]
+
* [[RXN-12547]]
−
* With common name(s):
+
== Reaction(s) known to produce the compound ==
−
** 1 a dietary all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 a long-chain fatty acid[c] '''+''' 1 all-trans-retinol[c] '''+''' 1 H+[c]
+
* [[RXN-12575]]
−
 
+
* [[3.1.1.64-RXN]]
−
== Genes associated with this reaction  ==
+
* [[RXN-12579]]
−
Genes have been associated with this reaction based on different elements listed below.
+
== Reaction(s) of unknown directionality ==
−
* Gene: [[Tiso_gene_2108]]
+
* [[RETINOL-DEHYDROGENASE-RXN]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_17612]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_3215]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_17639]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_11437]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_8902]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_17613]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_9140]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_288]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_17614]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_2109]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_14063]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_16817]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_14062]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_17143]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_7915]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_14109]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_5716]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_2983]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_905]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_19184]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_14064]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_906]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* LIPID_MAPS : LMPR01090001
−
{{#set: common name=ORF}}
+
* CAS : 68-26-8
−
{{#set: common name=zinc_finger_fyve_domain-containing_protein}}
+
* CAS : 11103-57-4
−
{{#set: common name=triacylglycerol_lipase}}
+
* Wikipedia : Retinol
−
{{#set: common name=class_3_lipase}}
+
* DRUGBANK : DB00162
−
{{#set: ec number=EC-3.1.1.3}}
+
* PUBCHEM:
−
{{#set: gene associated=Tiso_gene_2108|Tiso_gene_17612|Tiso_gene_3215|Tiso_gene_17639|Tiso_gene_11437|Tiso_gene_8902|Tiso_gene_17613|Tiso_gene_9140|Tiso_gene_288|Tiso_gene_17614|Tiso_gene_2109|Tiso_gene_14063|Tiso_gene_16817|Tiso_gene_14062|Tiso_gene_17143|Tiso_gene_7915|Tiso_gene_14109|Tiso_gene_5716|Tiso_gene_2983|Tiso_gene_905|Tiso_gene_19184|Tiso_gene_14064|Tiso_gene_906}}
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=445354 445354]
−
{{#set: in pathway=PWY-6857}}
+
* HMDB : HMDB00305
−
{{#set: reconstruction category=orthology|annotation}}
+
* LIGAND-CPD:
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
** [http://www.genome.jp/dbget-bin/www_bget?C00473 C00473]
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
* CHEMSPIDER:
 +
** [http://www.chemspider.com/Chemical-Structure.393012.html 393012]
 +
* CHEBI:
 +
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17336 17336]
 +
* METABOLIGHTS : MTBLC17336
 +
{{#set: smiles=CC(=CC=CC(C)=CCO)C=CC1(=C(C)CCCC(C)(C)1)}}
 +
{{#set: common name=all-trans-retinol}}
 +
{{#set: inchi key=InChIKey=FPIPGXGPPPQFEQ-OVSJKPMPSA-N}}
 +
{{#set: molecular weight=286.456    }}
 +
{{#set: common name=trans-retinol|retinol|vitamin A|vitamin A1}}
 +
{{#set: consumed by=1.3.99.23-RXN|RXN-12547}}
 +
{{#set: produced by=RXN-12575|3.1.1.64-RXN|RXN-12579}}
 +
{{#set: reversible reaction associated=RETINOL-DEHYDROGENASE-RXN}}

Latest revision as of 19:16, 21 March 2018

Metabolite CPD-13524

  • smiles:
    • CC(=CC=CC(C)=CCO)C=CC1(=C(C)CCCC(C)(C)1)
  • common name:
    • all-trans-retinol
  • inchi key:
    • InChIKey=FPIPGXGPPPQFEQ-OVSJKPMPSA-N
  • molecular weight:
    • 286.456
  • Synonym(s):
    • trans-retinol
    • retinol
    • vitamin A
    • vitamin A1

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIPID_MAPS : LMPR01090001
  • CAS : 68-26-8
  • CAS : 11103-57-4
  • Wikipedia : Retinol
  • DRUGBANK : DB00162
  • PUBCHEM:
  • HMDB : HMDB00305
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC17336





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-13524&oldid=40507"