Difference between revisions of "Tiso gene 4493"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_mitochondrial-proc...")
(Created page with "Category:Gene == Gene Tiso_gene_4493 == * right end position: ** 13169 * transcription direction: ** POSITIVE * left end position: ** 11810 * centisome position: ** 79.835...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] ==
+
== Gene Tiso_gene_4493 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 13169
−
* common name:
+
* transcription direction:
−
** probable_mitochondrial-processingpeptidasesubunitbeta
+
** POSITIVE
−
** cytochrome_b6-fcomplexiron-sulfurchloroplastic
+
* left end position:
−
** ubiquinol-cytochrome_c_reductase
+
** 11810
−
* ec number:
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/1.10.2.2 EC-1.10.2.2]
+
** 79.83506   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[RXN-13037]]
−
** 1 [[Ubiquinones]][c] '''+''' 2 [[Reduced-CycA1-cytochromes]][e] '''+''' 4 [[PROTON]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 2 [[PROTON]][e] '''+''' 2 [[Oxidized-CycA1-cytochromes]][e]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 a ubiquinone[c] '''+''' 2 a reduced CycA1 cytochrome[e] '''+''' 4 H+[c] '''=>''' 1 an ubiquinol[c] '''+''' 2 H+[e] '''+''' 2 an oxidized CycA1 cytochrome[e]
+
* Reaction: [[RXN-13039]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: automated-name-match
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-17127]]
−
* Gene: [[Tiso_gene_7235]]
+
** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** Assignment: automated-name-match
−
* Gene: [[Tiso_gene_9627]]
+
* Reaction: [[RXN-8654]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[RXN-8655]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
−
** Source: [[annotation-experimental_annotation]]
+
* Reaction: [[RXN0-1141]]
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_4973]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_18330]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: automated-name-match
−
* Gene: [[Tiso_gene_15926]]
+
* Reaction: [[RXN0-5098]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
−
== Pathways  ==
+
* Reaction: [[RXN0-947]]
−
* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-7382]]
 +
* [[PWY0-1275]]
 +
* [[PWY-6987]]
 +
* [[PWY-6984]]
 +
* [[PWY0-522]]
 +
* [[PWY0-501]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=13169}}
−
{{#set: common name=probable_mitochondrial-processingpeptidasesubunitbeta}}
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: common name=cytochrome_b6-fcomplexiron-sulfurchloroplastic}}
+
{{#set: left end position=11810}}
−
{{#set: common name=ubiquinol-cytochrome_c_reductase}}
+
{{#set: centisome position=79.83506    }}
−
{{#set: ec number=EC-1.10.2.2}}
+
{{#set: reaction associated=RXN-13037|RXN-13039|RXN-17127|RXN-8654|RXN-8655|RXN0-1141|RXN0-5098|RXN0-947}}
−
{{#set: gene associated=Tiso_gene_7235|Tiso_gene_9627|Tiso_gene_4973|Tiso_gene_18330|Tiso_gene_15926}}
+
{{#set: pathway associated=PWY-7382|PWY0-1275|PWY-6987|PWY-6984|PWY0-522|PWY0-501}}
−
{{#set: in pathway=PWY-6692}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:21, 21 March 2018

Gene Tiso_gene_4493

  • right end position:
    • 13169
  • transcription direction:
    • POSITIVE
  • left end position:
    • 11810
  • centisome position:
    • 79.83506
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4493&oldid=41116"