Difference between revisions of "RXN-16389"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6151 PWY-6151] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6151 PWY-6151] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** S-adenosyl-L-methionine cycle I
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** polyketide_synthase
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** SAM cycle
 
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** activated methyl cycle
 
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** AMC
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[16-HYDROXYPALMITATE]][c] '''=>''' 1 [[CPD-17621]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14191]]
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 16-hydroxypalmitate[c] '''=>''' 1 16-hydroxypalmitoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* [[HOMOCYSMET-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_10876]]
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*** [[Tiso_gene_1602]]
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** Source: [[annotation-in-silico_annotation]]
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** 2 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_9394]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-7605]]
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*** Assignment: EC-NUMBER
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** 0 associated gene:
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** Source: [[annotation-experimental_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_4191]]
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* [[SAM-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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** 0 associated gene:
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*** Assignment: EC-NUMBER
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== Reaction(s) not found ==
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYLHOMOCYSTEINASE-RXN RIBOSYLHOMOCYSTEINASE-RXN]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7855]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_348]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321]
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** '''3''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
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** '''8''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6151 PWY-6151]
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{{#set: common name=polyketide_synthase}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: common name=S-adenosyl-L-methionine cycle I}}
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{{#set: common name=ORF}}
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{{#set: common name=SAM cycle|activated methyl cycle|AMC}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: reaction found=4}}
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{{#set: gene associated=Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_4191|Tiso_gene_500|Tiso_gene_136|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_348|Tiso_gene_13394}}
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{{#set: total reaction=6}}
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{{#set: in pathway=PWY-321|PWY-6733|PWY-1121}}
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{{#set: completion rate=67.0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:24, 21 March 2018

Reaction RXN-16389

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 16-hydroxypalmitate[c] => 1 16-hydroxypalmitoyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-321, cutin biosynthesis: PWY-321
    • 3 reactions found over 16 reactions in the full pathway
  • PWY-6733, sporopollenin precursors biosynthesis: PWY-6733
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16389&oldid=41353"