Difference between revisions of "RXN0-2381"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5651 PWY-5651] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] == * direction: ** REVERSIBLE * common name: ** tryptophan_synthase_(alpha_bet...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5651 PWY-5651] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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* common name:
 
* common name:
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** L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
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** tryptophan_synthase_(alpha_beta_chains)
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.2.8 EC-4.1.2.8]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''5''' reactions in the full pathway
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* With identifiers:
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* [[1.13.11.6-RXN]]
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** 1 [[INDOLE-3-GLYCEROL-P]][c] '''<=>''' 1 [[INDOLE]][c] '''+''' 1 [[GAP]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_10922]]
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** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''<=>''' 1 indole[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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* [[3-HYDROXY-KYNURENINASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_17207]]
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*** [[Tiso_gene_10685]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_10684]]
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* Gene: [[Tiso_gene_4604]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* [[ARYLFORMAMIDASE-RXN]]
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** Source: [[annotation-experimental_annotation]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_16921]]
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** Source: [[orthology-esiliculosus]]
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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* [[KYNURENINE-3-MONOOXYGENASE-RXN]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** 3 associated gene(s):
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* [[PWY-6949]], DIBOA-glucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6949 PWY-6949]
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*** [[Tiso_gene_14398]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_6196]]
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== Reconstruction information  ==
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*** [[Tiso_gene_15790]]
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* Category: [[orthology]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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* Category: [[annotation]]
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== Reaction(s) not found ==
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8665 RXN-8665]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14081 14081]
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{{#set: taxonomic range=TAX-33208}}
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* LIGAND-RXN:
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{{#set: common name=L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02340 R02340]
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{{#set: reaction found=4}}
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{{#set: direction=REVERSIBLE}}
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{{#set: total reaction=5}}
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{{#set: common name=tryptophan_synthase_(alpha_beta_chains)}}
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{{#set: completion rate=80.0}}
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{{#set: ec number=EC-4.1.2.8}}
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{{#set: gene associated=Tiso_gene_17207|Tiso_gene_4604}}
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{{#set: in pathway=TRPSYN-PWY|PWY-6949}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:25, 21 March 2018

Reaction RXN0-2381

  • direction:
    • REVERSIBLE
  • common name:
    • tryptophan_synthase_(alpha_beta_chains)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] <=> 1 indole[c] + 1 D-glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6949, DIBOA-glucoside biosynthesis: PWY-6949
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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