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Line 1: |
| − | [[Category:Pathway]] | + | [[Category:Reaction]] |
| − | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13304 RXN-13304] == |
| − | * taxonomic range: | + | * direction: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157] | + | ** LEFT-TO-RIGHT |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759] | + | * ec number: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] | + | ** [http://enzyme.expasy.org/EC/4.2.1.134 EC-4.2.1.134] |
| − | * common name:
| + | |
| − | ** pyrimidine deoxyribonucleotides de novo biosynthesis I
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction(s) found == | + | == Reaction Formula == |
| − | '''9''' reactions found over '''9''' reactions in the full pathway
| + | * With identifiers: |
| − | * [[CDPREDUCT-RXN]] | + | ** 1 [[CPD-14277]][c] '''=>''' 1 [[CPD-14282]][c] '''+''' 1 [[WATER]][c] |
| − | ** 4 associated gene(s):
| + | * With common name(s): |
| − | *** [[Tiso_gene_10617]] | + | ** 1 (3R)-3-hydroxy-lignoceroyl-CoA[c] '''=>''' 1 trans-lignocer-2-enoyl-CoA[c] '''+''' 1 H2O[c] |
| − | *** [[Tiso_gene_9916]]
| + | |
| − | *** [[Tiso_gene_9915]]
| + | == Genes associated with this reaction == |
| − | *** [[Tiso_gene_10138]]
| + | == Pathways == |
| − | ** 6 reconstruction source(s) associated:
| + | * [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036] |
| − | *** [[annotation-experimental_annotation]]
| + | ** '''16''' reactions found over '''16''' reactions in the full pathway |
| − | *** [[orthology-esiliculosus]]
| + | == Reconstruction information == |
| − | *** [[annotation-in-silico_annotation]]
| + | * Category: [[annotation]] |
| − | *** [[orthology-athaliana]]
| + | ** Source: [[annotation-experimental_annotation]] |
| − | *** [[orthology-synechocystis]]
| + | *** Tool: [[pathwaytools]] |
| − | *** [[manual-primary_network]]
| + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[DCDPKIN-RXN]] | + | *** Tool: [[pathwaytools]] |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_9290]] | + | |
| − | *** [[Tiso_gene_17271]]
| + | |
| − | *** [[Tiso_gene_17272]]
| + | |
| − | *** [[Tiso_gene_195]]
| + | |
| − | *** [[Tiso_gene_18224]]
| + | |
| − | *** [[Tiso_gene_16529]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[DTDPKIN-RXN]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18224]]
| + | |
| − | *** [[Tiso_gene_16529]]
| + | |
| − | *** [[Tiso_gene_195]]
| + | |
| − | *** [[Tiso_gene_17271]]
| + | |
| − | *** [[Tiso_gene_17272]]
| + | |
| − | *** [[Tiso_gene_9290]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[DTMPKI-RXN]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[Tiso_gene_3755]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-experimental_annotation]] | + | |
| − | * [[DUDPKIN-RXN]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_17272]]
| + | |
| − | *** [[Tiso_gene_16529]]
| + | |
| − | *** [[Tiso_gene_18224]]
| + | |
| − | *** [[Tiso_gene_195]]
| + | |
| − | *** [[Tiso_gene_9290]]
| + | |
| − | *** [[Tiso_gene_17271]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]] | + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[DUTP-PYROP-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18793]]
| + | |
| − | *** [[Tiso_gene_18792]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]] | + | |
| − | * [[RXN-12195]]
| + | |
| − | ** 101 associated gene(s):
| + | |
| − | *** [[Tiso_gene_1960]]
| + | |
| − | *** [[Tiso_gene_11098]]
| + | |
| − | *** [[Tiso_gene_12899]]
| + | |
| − | *** [[Tiso_gene_2924]]
| + | |
| − | *** [[Tiso_gene_14226]]
| + | |
| − | *** [[Tiso_gene_674]]
| + | |
| − | *** [[Tiso_gene_8601]]
| + | |
| − | *** [[Tiso_gene_8584]]
| + | |
| − | *** [[Tiso_gene_9959]]
| + | |
| − | *** [[Tiso_gene_2929]]
| + | |
| − | *** [[Tiso_gene_9423]]
| + | |
| − | *** [[Tiso_gene_873]]
| + | |
| − | *** [[Tiso_gene_8763]]
| + | |
| − | *** [[Tiso_gene_9004]]
| + | |
| − | *** [[Tiso_gene_14816]]
| + | |
| − | *** [[Tiso_gene_5529]]
| + | |
| − | *** [[Tiso_gene_4192]]
| + | |
| − | *** [[Tiso_gene_8859]]
| + | |
| − | *** [[Tiso_gene_14227]]
| + | |
| − | *** [[Tiso_gene_9234]]
| + | |
| − | *** [[Tiso_gene_38]]
| + | |
| − | *** [[Tiso_gene_2889]]
| + | |
| − | *** [[Tiso_gene_4194]]
| + | |
| − | *** [[Tiso_gene_15043]]
| + | |
| − | *** [[Tiso_gene_537]]
| + | |
| − | *** [[Tiso_gene_4026]]
| + | |
| − | *** [[Tiso_gene_14646]]
| + | |
| − | *** [[Tiso_gene_195]]
| + | |
| − | *** [[Tiso_gene_3653]]
| + | |
| − | *** [[Tiso_gene_1444]]
| + | |
| − | *** [[Tiso_gene_8949]]
| + | |
| − | *** [[Tiso_gene_17616]]
| + | |
| − | *** [[Tiso_gene_546]]
| + | |
| − | *** [[Tiso_gene_13738]]
| + | |
| − | *** [[Tiso_gene_538]]
| + | |
| − | *** [[Tiso_gene_2449]]
| + | |
| − | *** [[Tiso_gene_1959]]
| + | |
| − | *** [[Tiso_gene_7387]]
| + | |
| − | *** [[Tiso_gene_2447]]
| + | |
| − | *** [[Tiso_gene_20353]]
| + | |
| − | *** [[Tiso_gene_5166]]
| + | |
| − | *** [[Tiso_gene_4596]]
| + | |
| − | *** [[Tiso_gene_2448]]
| + | |
| − | *** [[Tiso_gene_5525]]
| + | |
| − | *** [[Tiso_gene_12148]]
| + | |
| − | *** [[Tiso_gene_20327]]
| + | |
| − | *** [[Tiso_gene_11012]]
| + | |
| − | *** [[Tiso_gene_2176]]
| + | |
| − | *** [[Tiso_gene_13325]]
| + | |
| − | *** [[Tiso_gene_13268]]
| + | |
| − | *** [[Tiso_gene_12149]]
| + | |
| − | *** [[Tiso_gene_2451]]
| + | |
| − | *** [[Tiso_gene_6614]]
| + | |
| − | *** [[Tiso_gene_2897]]
| + | |
| − | *** [[Tiso_gene_4436]]
| + | |
| − | *** [[Tiso_gene_623]]
| + | |
| − | *** [[Tiso_gene_9926]]
| + | |
| − | *** [[Tiso_gene_6181]]
| + | |
| − | *** [[Tiso_gene_16478]]
| + | |
| − | *** [[Tiso_gene_6180]]
| + | |
| − | *** [[Tiso_gene_1984]]
| + | |
| − | *** [[Tiso_gene_2452]]
| + | |
| − | *** [[Tiso_gene_15465]]
| + | |
| − | *** [[Tiso_gene_4092]]
| + | |
| − | *** [[Tiso_gene_7745]]
| + | |
| − | *** [[Tiso_gene_829]]
| + | |
| − | *** [[Tiso_gene_250]]
| + | |
| − | *** [[Tiso_gene_1541]]
| + | |
| − | *** [[Tiso_gene_199]]
| + | |
| − | *** [[Tiso_gene_7123]]
| + | |
| − | *** [[Tiso_gene_10282]]
| + | |
| − | *** [[Tiso_gene_9114]]
| + | |
| − | *** [[Tiso_gene_2450]]
| + | |
| − | *** [[Tiso_gene_14474]]
| + | |
| − | *** [[Tiso_gene_8461]]
| + | |
| − | *** [[Tiso_gene_4437]]
| + | |
| − | *** [[Tiso_gene_4726]]
| + | |
| − | *** [[Tiso_gene_9659]]
| + | |
| − | *** [[Tiso_gene_8950]]
| + | |
| − | *** [[Tiso_gene_2068]]
| + | |
| − | *** [[Tiso_gene_9243]]
| + | |
| − | *** [[Tiso_gene_13264]]
| + | |
| − | *** [[Tiso_gene_4330]]
| + | |
| − | *** [[Tiso_gene_13681]]
| + | |
| − | *** [[Tiso_gene_1610]]
| + | |
| − | *** [[Tiso_gene_13653]]
| + | |
| − | *** [[Tiso_gene_17449]]
| + | |
| − | *** [[Tiso_gene_10221]]
| + | |
| − | *** [[Tiso_gene_19098]]
| + | |
| − | *** [[Tiso_gene_4155]]
| + | |
| − | *** [[Tiso_gene_8164]]
| + | |
| − | *** [[Tiso_gene_19350]]
| + | |
| − | *** [[Tiso_gene_2631]]
| + | |
| − | *** [[Tiso_gene_17751]]
| + | |
| − | *** [[Tiso_gene_1611]]
| + | |
| − | *** [[Tiso_gene_3287]]
| + | |
| − | *** [[Tiso_gene_7734]]
| + | |
| − | *** [[Tiso_gene_572]]
| + | |
| − | *** [[Tiso_gene_1291]]
| + | |
| − | *** [[Tiso_gene_14239]]
| + | |
| − | *** [[Tiso_gene_8860]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]] | + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[THYMIDYLATESYN-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_7708]]
| + | |
| − | *** [[Tiso_gene_18478]] | + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[UDPREDUCT-RXN]] | + | |
| − | ** 4 associated gene(s): | + | |
| − | *** [[Tiso_gene_9915]]
| + | |
| − | *** [[Tiso_gene_9916]]
| + | |
| − | *** [[Tiso_gene_10138]]
| + | |
| − | *** [[Tiso_gene_10617]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | == Reaction(s) not found ==
| + | |
| | == External links == | | == External links == |
| − | * ECOCYC:
| + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | ** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7184 PWY-7184]
| + | {{#set: ec number=EC-4.2.1.134}} |
| − | {{#set: taxonomic range=TAX-2157}} | + | {{#set: in pathway=PWY-7036}} |
| − | {{#set: taxonomic range=TAX-2759}}
| + | {{#set: reconstruction category=annotation}} |
| − | {{#set: taxonomic range=TAX-2}} | + | {{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}} |
| − | {{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis I}} | + | {{#set: reconstruction tool=pathwaytools}} |
| − | {{#set: reaction found=9}} | + | |
| − | {{#set: total reaction=9}} | + | |
| − | {{#set: completion rate=100.0}} | + | |
