Difference between revisions of "PWY-6829"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMAMIDASE-RXN FORMAMIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidase * e...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMAMIDASE-RXN FORMAMIDASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
−
** formamidase
+
** tRNA methylation (yeast)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.5.1.49 EC-3.5.1.49]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''15''' reactions in the full pathway
−
** 1 [[FORMAMIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[AMMONIUM]][c]
+
* [[RXN-11856]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 formamide[c] '''+''' 1 H2O[c] '''=>''' 1 formate[c] '''+''' 1 ammonium[c]
+
*** [[Tiso_gene_3065]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-experimental_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-12375]]
−
* Gene: [[Tiso_gene_13559]]
+
** 2 associated gene(s):
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[Tiso_gene_9360]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_16307]]
−
* Gene: [[Tiso_gene_13558]]
+
** 2 reconstruction source(s) associated:
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** [[annotation-experimental_annotation]]
−
== Pathways  ==
+
* [[RXN-12376]]
−
* [[PWY-7142]], cyanide detoxification II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7142 PWY-7142]
+
** 2 associated gene(s):
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
*** [[Tiso_gene_9360]]
−
== Reconstruction information  ==
+
*** [[Tiso_gene_16307]]
−
* Category: [[annotation]]
+
** 2 reconstruction source(s) associated:
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** [[annotation-experimental_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11857 RXN-11857]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11858 RXN-11858]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11859 RXN-11859]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11868 RXN-11868]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12368 RXN-12368]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12374 RXN-12374]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12461 RXN-12461]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12466 RXN-12466]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12477 RXN-12477]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12478 RXN-12478]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12479 RXN-12479]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14517 RXN-14517]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21948 21948]
+
{{#set: common name=tRNA methylation (yeast)}}
−
* LIGAND-RXN:
+
{{#set: reaction found=3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00524 R00524]
+
{{#set: total reaction=15}}
−
* UNIPROT:
+
{{#set: completion rate=20.0}}
−
** [http://www.uniprot.org/uniprot/Q50228 Q50228]
+
−
** [http://www.uniprot.org/uniprot/Q9SZE9 Q9SZE9]
+
−
** [http://www.uniprot.org/uniprot/Q9SZF0 Q9SZF0]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=formamidase}}
+
−
{{#set: ec number=EC-3.5.1.49}}
+
−
{{#set: gene associated=Tiso_gene_13559|Tiso_gene_13558}}
+
−
{{#set: in pathway=PWY-7142}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:27, 21 March 2018

Pathway PWY-6829

  • taxonomic range:
  • common name:
    • tRNA methylation (yeast)
  • Synonym(s):

Reaction(s) found

3 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6829&oldid=41736"