Difference between revisions of "PWY-5104"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] == * direction: ** REVERSIBLE * common name: ** ghmp_n-terminal_doma...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
 
* common name:
 
* common name:
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** ghmp_n-terminal_domain-containing_protein
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** L-isoleucine biosynthesis IV
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** ORF
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** galactokinase-like_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.6 EC-2.7.1.6]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''6''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[ALPHA-D-GALACTOSE]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GALACTOSE-1P]][c]
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* [[ACETOOHBUTSYN-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 ATP[c] '''+''' 1 &alpha;-D-galactose[c] '''<=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 &alpha;-D-galactose 1-phosphate[c]
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*** [[Tiso_gene_11362]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[manual-primary_network]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_11795]]
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* [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_14984]]
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* Gene: [[Tiso_gene_12191]]
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*** [[Tiso_gene_18403]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_17748]]
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* Gene: [[Tiso_gene_5041]]
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** 7 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10797]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
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*** [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-athaliana]]
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* [[DIHYDROXYMETVALDEHYDRAT-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_5042]]
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*** [[Tiso_gene_1563]]
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** Source: [[annotation-in-silico_annotation]]
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** 6 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
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*** [[orthology-athaliana]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
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*** [[manual-primary_network]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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== Reaction(s) not found ==
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOBUTYRATE-SYNTHASE-RXN 2-OXOBUTYRATE-SYNTHASE-RXN]
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* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
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* [http://metacyc.org/META/NEW-IMAGE?object=PROPIONATE--COA-LIGASE-RXN PROPIONATE--COA-LIGASE-RXN]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16062 RXN-16062]
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13553 13553]
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{{#set: taxonomic range=TAX-224756}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-183925}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
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{{#set: common name=L-isoleucine biosynthesis IV}}
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* UNIPROT:
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P09608 P09608]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/Q01415 Q01415]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P22713 P22713]
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** [http://www.uniprot.org/uniprot/P31767 P31767]
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** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
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** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
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** [http://www.uniprot.org/uniprot/P96993 P96993]
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** [http://www.uniprot.org/uniprot/P04385 P04385]
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** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
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** [http://www.uniprot.org/uniprot/P13227 P13227]
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** [http://www.uniprot.org/uniprot/P39574 P39574]
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** [http://www.uniprot.org/uniprot/P13045 P13045]
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** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ghmp_n-terminal_domain-containing_protein}}
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{{#set: common name=ORF}}
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{{#set: common name=galactokinase-like_protein}}
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{{#set: ec number=EC-2.7.1.6}}
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{{#set: gene associated=Tiso_gene_11795|Tiso_gene_12191|Tiso_gene_5041|Tiso_gene_10797|Tiso_gene_5042}}
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{{#set: in pathway=PWY-6317|PWY66-422|PWY-6527|PWY-3821}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:29, 21 March 2018

Pathway PWY-5104

Reaction(s) found

3 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5104&oldid=41937"