Difference between revisions of "LEUCINE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5-OXOPROLINE 5-OXOPROLINE] == * smiles: ** C(=O)(C1(NC(CC1)=O))[O-] * common name: ** 5-oxo-L-p...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5-OXOPROLINE 5-OXOPROLINE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** C(=O)(C1(NC(CC1)=O))[O-]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5-oxo-L-proline
+
** leucine--trna_ligase
−
* inchi key:
+
** ORF
−
** InChIKey=ODHCTXKNWHHXJC-VKHMYHEASA-M
+
* ec number:
−
* molecular weight:
+
** [http://enzyme.expasy.org/EC/6.1.1.4 EC-6.1.1.4]
−
** 128.107   
+
 
* Synonym(s):
 
* Synonym(s):
−
** pyrrolidone-COO
 
−
** pyrrolidone-carboxylate
 
−
** L-5-pyrrolidone-2-carboxylic acid
 
−
** L-pyroglutamic acid
 
−
** 5-oxo-L-proline
 
−
** pyroglutamic acid
 
−
** pyroglutamate
 
−
** 5-pyrrolidone-2-carboxylic acid
 
−
** L-pyroglutamate
 
−
** Pidolic acid
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[5-OXOPROLINASE-ATP-HYDROLYSING-RXN]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[LEU]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[LEU-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-LEU-tRNAs]][c]
−
* [[GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 L-leucine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAleu[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-leucyl-[tRNAleu][c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_11524]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15439]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 98-79-3
+
* RHEA:
−
* PUBCHEM:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11688 11688]
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5289118 5289118]
+
* LIGAND-RXN:
−
* HMDB : HMDB00267
+
** [http://www.genome.jp/dbget-bin/www_bget?R03657 R03657]
−
* LIGAND-CPD:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?C01879 C01879]
+
** [http://www.uniprot.org/uniprot/O27552 O27552]
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P56457 P56457]
−
** [http://www.chemspider.com/Chemical-Structure.4451146.html 4451146]
+
** [http://www.uniprot.org/uniprot/O51267 O51267]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/O83595 O83595]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58402 58402]
+
** [http://www.uniprot.org/uniprot/O84211 O84211]
−
{{#set: smiles=C(=O)(C1(NC(CC1)=O))[O-]}}
+
** [http://www.uniprot.org/uniprot/Q9Z930 Q9Z930]
−
{{#set: common name=5-oxo-L-proline}}
+
** [http://www.uniprot.org/uniprot/P47508 P47508]
−
{{#set: inchi key=InChIKey=ODHCTXKNWHHXJC-VKHMYHEASA-M}}
+
** [http://www.uniprot.org/uniprot/P36430 P36430]
−
{{#set: molecular weight=128.107    }}
+
** [http://www.uniprot.org/uniprot/O66680 O66680]
−
{{#set: common name=pyrrolidone-COO|pyrrolidone-carboxylate|L-5-pyrrolidone-2-carboxylic acid|L-pyroglutamic acid|5-oxo-L-proline|pyroglutamic acid|pyroglutamate|5-pyrrolidone-2-carboxylic acid|L-pyroglutamate|Pidolic acid}}
+
** [http://www.uniprot.org/uniprot/O67646 O67646]
−
{{#set: consumed by=5-OXOPROLINASE-ATP-HYDROLYSING-RXN}}
+
** [http://www.uniprot.org/uniprot/Q9ZDB1 Q9ZDB1]
−
{{#set: produced by=GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN}}
+
** [http://www.uniprot.org/uniprot/Q9WY15 Q9WY15]
 +
** [http://www.uniprot.org/uniprot/Q9PNK3 Q9PNK3]
 +
** [http://www.uniprot.org/uniprot/Q9JW39 Q9JW39]
 +
** [http://www.uniprot.org/uniprot/Q9ZJ63 Q9ZJ63]
 +
** [http://www.uniprot.org/uniprot/Q9JXT2 Q9JXT2]
 +
** [http://www.uniprot.org/uniprot/P43827 P43827]
 +
** [http://www.uniprot.org/uniprot/O58698 O58698]
 +
** [http://www.uniprot.org/uniprot/Q9CHB6 Q9CHB6]
 +
** [http://www.uniprot.org/uniprot/P26637 P26637]
 +
** [http://www.uniprot.org/uniprot/P75398 P75398]
 +
** [http://www.uniprot.org/uniprot/P73274 P73274]
 +
** [http://www.uniprot.org/uniprot/Q48955 Q48955]
 +
** [http://www.uniprot.org/uniprot/Q48964 Q48964]
 +
** [http://www.uniprot.org/uniprot/Q49051 Q49051]
 +
** [http://www.uniprot.org/uniprot/P11325 P11325]
 +
** [http://www.uniprot.org/uniprot/P07813 P07813]
 +
** [http://www.uniprot.org/uniprot/P10857 P10857]
 +
** [http://www.uniprot.org/uniprot/P15181 P15181]
 +
** [http://www.uniprot.org/uniprot/Q50192 Q50192]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=leucine--trna_ligase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.1.1.4}}
 +
{{#set: gene associated=Tiso_gene_11524|Tiso_gene_15439}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:32, 21 March 2018

Reaction LEUCINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • leucine--trna_ligase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-leucine[c] + 1 ATP[c] + 1 a tRNAleu[c] => 1 diphosphate[c] + 1 AMP[c] + 1 an L-leucyl-[tRNAleu][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=LEUCINE--TRNA-LIGASE-RXN&oldid=42212"