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| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] == | + | == Gene Tiso_gene_13100 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 1972 |
| − | * common name: | + | * transcription direction: |
| − | ** polyketide_synthase | + | ** POSITIVE |
| − | ** 3-oxoacyl-synthase | + | * left end position: |
| − | * ec number:
| + | ** 140 |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86] | + | * centisome position: |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85] | + | ** 2.1432946 |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41] | + | |
| | * Synonym(s): | | * Synonym(s): |
| − | ** β-ketoacyl-ACP synthase I
| |
| − | ** β-ketoacyl-acyl carrier protein synthetase
| |
| − | ** β-ketoacyl-[acyl carrier protein] synthase
| |
| − | ** condensing enzyme
| |
| − | ** β-ketoacyl acyl carrier protein synthase
| |
| − | ** 3-oxoacyl-[acyl-carrier-protein] synthase
| |
| − | ** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
| |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[3.1.27.1-RXN]] |
| − | ** 1 [[MALONYL-ACP]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 a malonyl-[acp][c] '''+''' 1 a dodecanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * Gene: [[Tiso_gene_500]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_13394]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_15991]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_14485]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_135]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_19302]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_10876]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_5939]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_136]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
| + | |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: ec-number |
| | + | == Pathways associated == |
| | == External links == | | == External links == |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | {{#set: right end position=1972}} |
| − | {{#set: common name=polyketide_synthase}} | + | {{#set: transcription direction=POSITIVE}} |
| − | {{#set: common name=3-oxoacyl-synthase}} | + | {{#set: left end position=140}} |
| − | {{#set: ec number=EC-2.3.1.86}} | + | {{#set: centisome position=2.1432946 }} |
| − | {{#set: ec number=EC-2.3.1.85}} | + | {{#set: reaction associated=3.1.27.1-RXN}} |
| − | {{#set: ec number=EC-2.3.1.41}}
| + | |
| − | {{#set: common name=β-ketoacyl-ACP synthase I|β-ketoacyl-acyl carrier protein synthetase|β-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|β-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)}}
| + | |
| − | {{#set: gene associated=Tiso_gene_500|Tiso_gene_13394|Tiso_gene_15991|Tiso_gene_14485|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_10876|Tiso_gene_5939|Tiso_gene_136}}
| + | |
| − | {{#set: in pathway=PWY-5971}}
| + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
