|
|
Line 1: |
Line 1: |
| [[Category:Pathway]] | | [[Category:Pathway]] |
− | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5254 PWY-5254] == |
| * taxonomic range: | | * taxonomic range: |
− | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090] | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183980 TAX-183980] |
− | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183988 TAX-183988] |
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756] |
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939] |
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925] |
| * common name: | | * common name: |
− | ** palmitate biosynthesis II (bacteria and plants) | + | ** methanofuran biosynthesis |
| * Synonym(s): | | * Synonym(s): |
− | ** palmitic acid biosynthesis
| |
− | ** de novo lipogenesis
| |
| | | |
| == Reaction(s) found == | | == Reaction(s) found == |
− | '''31''' reactions found over '''31''' reactions in the full pathway | + | '''1''' reactions found over '''8''' reactions in the full pathway |
− | * [[3.1.2.21-RXN]] | + | * [[TYROSINE-DECARBOXYLASE-RXN]] |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | * [[4.2.1.58-RXN]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[4.2.1.59-RXN]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_6885]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | * [[4.2.1.61-RXN]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN-16393]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_348]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_9394]]
| + | |
− | *** [[Tiso_gene_4191]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_7855]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[RXN-9514]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9516]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | ** 6 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-athaliana]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | * [[RXN-9518]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9520]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN-9523]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | ** 6 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-athaliana]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | * [[RXN-9524]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9527]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | ** 6 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-athaliana]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | * [[RXN-9528]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9531]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | ** 6 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-athaliana]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | * [[RXN-9532]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9533]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN-9535]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | ** 6 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-athaliana]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | * [[RXN-9536]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9537]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_9421]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_6885]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_6671]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[orthology-creinhardtii]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[RXN-9539]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | ** 6 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-athaliana]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | * [[RXN-9540]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9549]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | * [[RXN-9623]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_9394]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_12275]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_7855]]
| + | |
− | *** [[Tiso_gene_348]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_4191]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-athaliana]]
| + | |
− | *** [[orthology-creinhardtii]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN-9655]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN-9657]]
| + | |
| ** 1 associated gene(s): | | ** 1 associated gene(s): |
− | *** [[Tiso_gene_10778]] | + | *** [[Tiso_gene_3686]] |
| ** 1 reconstruction source(s) associated: | | ** 1 reconstruction source(s) associated: |
− | *** [[orthology-esiliculosus]]
| |
− | * [[RXN-9658]]
| |
− | ** 1 associated gene(s):
| |
− | *** [[Tiso_gene_10778]]
| |
− | ** 2 reconstruction source(s) associated:
| |
− | *** [[orthology-synechocystis]]
| |
− | *** [[orthology-esiliculosus]]
| |
− | * [[RXN-9659]]
| |
− | ** 1 associated gene(s):
| |
− | *** [[Tiso_gene_10778]]
| |
− | ** 2 reconstruction source(s) associated:
| |
− | *** [[orthology-synechocystis]]
| |
− | *** [[orthology-esiliculosus]]
| |
− | * [[RXN-9660]]
| |
− | ** 1 associated gene(s):
| |
− | *** [[Tiso_gene_10778]]
| |
− | ** 1 reconstruction source(s) associated:
| |
− | *** [[orthology-esiliculosus]]
| |
− | * [[RXN-9661]]
| |
− | ** 1 associated gene(s):
| |
− | *** [[Tiso_gene_10778]]
| |
− | ** 1 reconstruction source(s) associated:
| |
− | *** [[orthology-esiliculosus]]
| |
− | * [[RXN-9662]]
| |
− | ** 1 associated gene(s):
| |
− | *** [[Tiso_gene_10778]]
| |
− | ** 1 reconstruction source(s) associated:
| |
− | *** [[orthology-esiliculosus]]
| |
− | * [[RXN-9663]]
| |
− | ** 1 associated gene(s):
| |
− | *** [[Tiso_gene_10778]]
| |
− | ** 2 reconstruction source(s) associated:
| |
− | *** [[manual-primary_network]]
| |
| *** [[orthology-esiliculosus]] | | *** [[orthology-esiliculosus]] |
| == Reaction(s) not found == | | == Reaction(s) not found == |
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-15944 RXN-15944] |
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-15945 RXN-15945] |
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-15946 RXN-15946] |
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-15947 RXN-15947] |
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-15949 RXN-15949] |
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8119 RXN-8119] |
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8123 RXN-8123] |
| == External links == | | == External links == |
− | * ECOCYC:
| + | {{#set: taxonomic range=TAX-183980}} |
− | ** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5971 PWY-5971]
| + | {{#set: taxonomic range=TAX-183988}} |
− | {{#set: taxonomic range=TAX-33090}} | + | {{#set: taxonomic range=TAX-224756}} |
− | {{#set: taxonomic range=TAX-2}} | + | {{#set: taxonomic range=TAX-183939}} |
− | {{#set: common name=palmitate biosynthesis II (bacteria and plants)}} | + | {{#set: taxonomic range=TAX-183925}} |
− | {{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}} | + | {{#set: common name=methanofuran biosynthesis}} |
− | {{#set: reaction found=31}} | + | {{#set: reaction found=1}} |
− | {{#set: total reaction=31}} | + | {{#set: total reaction=8}} |
− | {{#set: completion rate=100.0}} | + | {{#set: completion rate=13.0}} |