Difference between revisions of "Tiso gene 10646"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-DECARBOXYLASE-RXN MALONYL-COA-DECARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "Category:Gene == Gene Tiso_gene_10646 == * right end position: ** 7641 * transcription direction: ** POSITIVE * left end position: ** 5934 * centisome position: ** 70.7439...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-DECARBOXYLASE-RXN MALONYL-COA-DECARBOXYLASE-RXN] ==
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== Gene Tiso_gene_10646 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7641
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* common name:
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* transcription direction:
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** lipoxygenase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.1.1.9 EC-4.1.1.9]
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** 5934
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* centisome position:
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** 70.74392   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.2.1.13-RXN]]
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** 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ACETYL-COA]][c]
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* With common name(s):
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** 1 malonyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 acetyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_4463]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[GAPDHSYNEC-RXN]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[GAPOXNPHOSPHN-RXN]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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== Pathways  ==
 
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== Reconstruction information  ==
 
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* Category: [[orthology]]
 
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Reaction: [[TRIOSEPISOMERIZATION-RXN]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* Category: [[annotation]]
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* [[PWY-1042]]
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** Source: [[annotation-in-silico_annotation]]
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* [[P341-PWY]]
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*** Tool: [[pathwaytools]]
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* [[PWY66-399]]
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* [[PWY66-373]]
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* [[GLUCONEO-PWY]]
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* [[GLYCOLYSIS]]
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* [[PWY-6901]]
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* [[SUCSYN-PWY]]
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* [[P124-PWY]]
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* [[PWY-6142]]
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* [[CALVIN-PWY]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-5484]]
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* [[P185-PWY]]
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* [[P122-PWY]]
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* [[PWY-7003]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7641}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18781 18781]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5934}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00233 R00233]
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{{#set: centisome position=70.74392    }}
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* UNIPROT:
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{{#set: reaction associated=1.2.1.13-RXN|GAPDHSYNEC-RXN|GAPOXNPHOSPHN-RXN|TRIOSEPISOMERIZATION-RXN}}
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** [http://www.uniprot.org/uniprot/P12617 P12617]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-399|PWY66-373|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|SUCSYN-PWY|P124-PWY|PWY-6142|CALVIN-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|P185-PWY|P122-PWY|PWY-7003}}
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** [http://www.uniprot.org/uniprot/Q54112 Q54112]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=lipoxygenase}}
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{{#set: ec number=EC-4.1.1.9}}
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{{#set: gene associated=Tiso_gene_4463}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:35, 21 March 2018

Gene Tiso_gene_10646

  • right end position:
    • 7641
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5934
  • centisome position:
    • 70.74392
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10646&oldid=42524"