Difference between revisions of "TRYPDEG-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [h...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRYPDEG-PWY TRYPDEG-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRYPDEG-PWY TRYPDEG-PWY] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** ORF
+
** L-tryptophan degradation II (via pyruvate)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''2''' reactions found over '''3''' reactions in the full pathway
−
** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
+
* [[RXN-15124]]
−
* With common name(s):
+
** 0 associated gene:
−
** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c]
+
** 2 reconstruction source(s) associated:
−
 
+
*** [[annotation-experimental_annotation]]
−
== Genes associated with this reaction  ==
+
*** [[annotation-in-silico_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-15127]]
−
* Gene: [[Tiso_gene_18217]]
+
** 0 associated gene:
−
** Source: [[annotation-in-silico_annotation]]
+
** 2 reconstruction source(s) associated:
−
*** Assignment: EC-NUMBER
+
*** [[annotation-experimental_annotation]]
−
** Source: [[orthology-athaliana]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[orthology-athaliana]]
+
== Reaction(s) not found ==
−
** Source: [[orthology-synechocystis]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15578 RXN-15578]
−
** Source: [[orthology-esiliculosus]]
+
−
== Pathways  ==
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRYPDEG-PWY TRYPDEG-PWY]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
+
{{#set: common name=L-tryptophan degradation II (via pyruvate)}}
−
* UNIPROT:
+
{{#set: reaction found=2}}
−
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
+
{{#set: total reaction=3}}
−
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
+
{{#set: completion rate=67.0}}
−
** [http://www.uniprot.org/uniprot/P44725 P44725]
+
−
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
+
−
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
+
−
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
+
−
** [http://www.uniprot.org/uniprot/P37351 P37351]
+
−
** [http://www.uniprot.org/uniprot/P74234 P74234]
+
−
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-5.3.1.6}}
+
−
{{#set: gene associated=Tiso_gene_18217}}
+
−
{{#set: in pathway=P124-PWY|CALVIN-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:35, 21 March 2018

Pathway TRYPDEG-PWY

  • taxonomic range:
  • common name:
    • L-tryptophan degradation II (via pyruvate)
  • Synonym(s):

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRYPDEG-PWY&oldid=42585"