Difference between revisions of "TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] == * direction: ** LEFT-TO-RIGHT * common name: ** geranylgeranyl_diphosphate_re...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** geranylgeranyl_diphosphate_reductase
+
** drap_deaminase
 +
** pseudouridine_synthase_family_protein
 +
** ORF
 +
** pseudouridine_synthase
 +
** Transmembrane_protein
 +
** trna-pseudouridine_synthasei
 +
** ribosomal_large_subunit_pseudouridine_synthase_d
 +
** trna_pseudouridinesynthase
 +
** trna_pseudouridine_synthase
 +
** pseudouridylate_synthase
 +
** pseudouridine_synthase_rlu_family_protein
 +
** protein_pus7
 +
** trna_pseudouridine_synthase_a
 +
** pseudouridine
 +
** rna_pseudouridylate_synthase_domain-containing_protein_1
 +
** pseudouridine_synthase_1-like_protein
 +
** trna_pseudouridine_synthase_d
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[CPD-7005]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CPD-7004]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 geranylgeranyl chlorophyll a[c] '''+''' 1 NADPH[c] '''=>''' 1 dihydrogeranylgeranyl chlorophyll a[c] '''+''' 1 NADP+[c]
+
** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_2613]]
+
* Gene: [[Tiso_gene_3154]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17798]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15274]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5651]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1134]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18936]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4020]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2851]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7584]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11913]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_582]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9833]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17799]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18988]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16656]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18959]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_178]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11842]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10567]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12093]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18184]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1548]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17745]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4703]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2850]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2988]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19667]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13557]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18028]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18987]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16727]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5234]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3970]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3166]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12635]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_7417]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4021]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
Line 30: Line 170:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q59069 Q59069]
 +
** [http://www.uniprot.org/uniprot/P47428 P47428]
 +
** [http://www.uniprot.org/uniprot/P45291 P45291]
 +
** [http://www.uniprot.org/uniprot/Q45557 Q45557]
 +
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
 +
** [http://www.uniprot.org/uniprot/P53167 P53167]
 +
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
 +
** [http://www.uniprot.org/uniprot/P73295 P73295]
 +
** [http://www.uniprot.org/uniprot/P07649 P07649]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=geranylgeranyl_diphosphate_reductase}}
+
{{#set: common name=drap_deaminase}}
−
{{#set: gene associated=Tiso_gene_2613}}
+
{{#set: common name=pseudouridine_synthase_family_protein}}
−
{{#set: in pathway=PWY-5064}}
+
{{#set: common name=ORF}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=pseudouridine_synthase}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
{{#set: common name=Transmembrane_protein}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: common name=trna-pseudouridine_synthasei}}
 +
{{#set: common name=ribosomal_large_subunit_pseudouridine_synthase_d}}
 +
{{#set: common name=trna_pseudouridinesynthase}}
 +
{{#set: common name=trna_pseudouridine_synthase}}
 +
{{#set: common name=pseudouridylate_synthase}}
 +
{{#set: common name=pseudouridine_synthase_rlu_family_protein}}
 +
{{#set: common name=protein_pus7}}
 +
{{#set: common name=trna_pseudouridine_synthase_a}}
 +
{{#set: common name=pseudouridine}}
 +
{{#set: common name=rna_pseudouridylate_synthase_domain-containing_protein_1}}
 +
{{#set: common name=pseudouridine_synthase_1-like_protein}}
 +
{{#set: common name=trna_pseudouridine_synthase_d}}
 +
{{#set: ec number=EC-5.4.99.12}}
 +
{{#set: gene associated=Tiso_gene_3154|Tiso_gene_17798|Tiso_gene_15274|Tiso_gene_5651|Tiso_gene_1134|Tiso_gene_18936|Tiso_gene_4020|Tiso_gene_2851|Tiso_gene_7584|Tiso_gene_11913|Tiso_gene_582|Tiso_gene_9833|Tiso_gene_17799|Tiso_gene_18988|Tiso_gene_16656|Tiso_gene_18959|Tiso_gene_178|Tiso_gene_11842|Tiso_gene_10567|Tiso_gene_12093|Tiso_gene_18184|Tiso_gene_1548|Tiso_gene_17745|Tiso_gene_4703|Tiso_gene_2850|Tiso_gene_2988|Tiso_gene_19667|Tiso_gene_13557|Tiso_gene_18028|Tiso_gene_18987|Tiso_gene_16727|Tiso_gene_5234|Tiso_gene_19622|Tiso_gene_3970|Tiso_gene_3166|Tiso_gene_12635|Tiso_gene_7417|Tiso_gene_4021}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:36, 21 March 2018

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • drap_deaminase
    • pseudouridine_synthase_family_protein
    • ORF
    • pseudouridine_synthase
    • Transmembrane_protein
    • trna-pseudouridine_synthasei
    • ribosomal_large_subunit_pseudouridine_synthase_d
    • trna_pseudouridinesynthase
    • trna_pseudouridine_synthase
    • pseudouridylate_synthase
    • pseudouridine_synthase_rlu_family_protein
    • protein_pus7
    • trna_pseudouridine_synthase_a
    • pseudouridine
    • rna_pseudouridylate_synthase_domain-containing_protein_1
    • pseudouridine_synthase_1-like_protein
    • trna_pseudouridine_synthase_d
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links













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