Difference between revisions of "ASPARTATE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIMETHYLGLYCINE-DEHYDROGENASE-RXN DIMETHYLGLYCINE-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIMETHYLGLYCINE-DEHYDROGENASE-RXN DIMETHYLGLYCINE-DEHYDROGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dimethylglycine_dehydrogenase
+
** aspartyl-trna_synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.5.8.4 EC-1.5.8.4]
+
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[SARCOSINE]][c] '''+''' 1 [[ETF-Reduced]][c] '''+''' 1 [[FORMALDEHYDE]][c]
+
** 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dimethylglycine[c] '''+''' 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 H2O[c] '''=>''' 1 sarcosine[c] '''+''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 formaldehyde[c]
+
** 1 tRNAasp[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-aspartyl-[tRNAasp][c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_2717]]
+
* Gene: [[Tiso_gene_13081]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17185]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_7126]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22496 22496]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01565 R01565]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q63342 Q63342]
+
** [http://www.uniprot.org/uniprot/P56459 P56459]
 +
** [http://www.uniprot.org/uniprot/O26328 O26328]
 +
** [http://www.uniprot.org/uniprot/O83950 O83950]
 +
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
 +
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
 +
** [http://www.uniprot.org/uniprot/O32038 O32038]
 +
** [http://www.uniprot.org/uniprot/O67589 O67589]
 +
** [http://www.uniprot.org/uniprot/P43817 P43817]
 +
** [http://www.uniprot.org/uniprot/O51402 O51402]
 +
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
 +
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
 +
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 +
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 +
** [http://www.uniprot.org/uniprot/O58776 O58776]
 +
** [http://www.uniprot.org/uniprot/O84546 O84546]
 +
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 +
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 +
** [http://www.uniprot.org/uniprot/P47282 P47282]
 +
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 +
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 +
** [http://www.uniprot.org/uniprot/P36429 P36429]
 +
** [http://www.uniprot.org/uniprot/P75068 P75068]
 +
** [http://www.uniprot.org/uniprot/P73851 P73851]
 +
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 +
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 +
** [http://www.uniprot.org/uniprot/P04802 P04802]
 +
** [http://www.uniprot.org/uniprot/P15179 P15179]
 +
** [http://www.uniprot.org/uniprot/P21889 P21889]
 +
** [http://www.uniprot.org/uniprot/P14868 P14868]
 +
** [http://www.uniprot.org/uniprot/P15178 P15178]
 +
** [http://www.uniprot.org/uniprot/O81892 O81892]
 +
** [http://www.uniprot.org/uniprot/O74407 O74407]
 +
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dimethylglycine_dehydrogenase}}
+
{{#set: common name=aspartyl-trna_synthetase}}
−
{{#set: ec number=EC-1.5.8.4}}
+
{{#set: ec number=EC-6.1.1.12}}
−
{{#set: gene associated=Tiso_gene_2717}}
+
{{#set: gene associated=Tiso_gene_13081|Tiso_gene_17185|Tiso_gene_7126}}
−
{{#set: in pathway=PWY-3661}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:37, 21 March 2018

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aspartyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 tRNAasp[c] + 1 ATP[c] + 1 L-aspartate[c] => 1 diphosphate[c] + 1 an L-aspartyl-[tRNAasp][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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