Difference between revisions of "RXN-13001"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13001 RXN-13001] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13001 RXN-13001] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
** LEFT-TO-RIGHT
−
* common name:
+
* ec number:
−
** L-ascorbate biosynthesis I (L-galactose pathway)
+
** [http://enzyme.expasy.org/EC/4.2.1.134 EC-4.2.1.134]
 
* Synonym(s):
 
* Synonym(s):
−
** vitamin C biosynthesis
 
−
** ascorbic acid biosynthesis
 
−
** L-ascorbic acid biosynthesis I
 
−
** Smirnoff-Wheeler pathway
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''6''' reactions found over '''8''' reactions in the full pathway
+
* With identifiers:
−
* [[2.7.7.13-RXN]]
+
** 1 [[CPD-14419]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-14420]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_14704]]
+
** 1 3R-hydroxy-icosatrienoyl-CoA[c] '''=>''' 1 H2O[c] '''+''' 1 icosatrienoyl-2-enoyl CoA[c]
−
** 1 reconstruction source(s) associated:
+
 
−
*** [[orthology-synechocystis]]
+
== Genes associated with this reaction  ==
−
* [[GALACTONOLACTONE-DEHYDROGENASE-RXN]]
+
== Pathways  ==
−
** 1 associated gene(s):
+
* [[PWY-7602]], icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7602 PWY-7602]
−
*** [[Tiso_gene_210]]
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
** 2 reconstruction source(s) associated:
+
* [[PWY-7619]], juniperonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7619 PWY-7619]
−
*** [[annotation-in-silico_annotation]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
*** [[orthology-esiliculosus]]
+
* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7724 PWY-7724]
−
* [[PHOSMANMUT-RXN]]
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
** 4 associated gene(s):
+
== Reconstruction information  ==
−
*** [[Tiso_gene_5802]]
+
* Category: [[annotation]]
−
*** [[Tiso_gene_13477]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_14704]]
+
*** Tool: [[pathwaytools]]
−
*** [[Tiso_gene_4816]]
+
−
** 6 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[RXN-1882]]
+
−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_6621]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[RXN-1884]]
+
−
** 5 associated gene(s):
+
−
*** [[Tiso_gene_14920]]
+
−
*** [[Tiso_gene_14624]]
+
−
*** [[Tiso_gene_18748]]
+
−
*** [[Tiso_gene_703]]
+
−
*** [[Tiso_gene_4219]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[RXNQT-4142]]
+
−
** 3 associated gene(s):
+
−
*** [[Tiso_gene_11614]]
+
−
*** [[Tiso_gene_10754]]
+
−
*** [[Tiso_gene_15599]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=MANNPISOM-RXN MANNPISOM-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXNQT-4141 RXNQT-4141]
+
 
== External links  ==
 
== External links  ==
−
* ARACYC:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-882 PWY-882]
+
{{#set: ec number=EC-4.2.1.134}}
−
{{#set: taxonomic range=TAX-33090}}
+
{{#set: in pathway=PWY-7602|PWY-7619|PWY-7724}}
−
{{#set: common name=L-ascorbate biosynthesis I (L-galactose pathway)}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: common name=vitamin C biosynthesis|ascorbic acid biosynthesis|L-ascorbic acid biosynthesis I|Smirnoff-Wheeler pathway}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reaction found=6}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: total reaction=8}}
+
−
{{#set: completion rate=75.0}}
+

Latest revision as of 20:37, 21 March 2018

Reaction RXN-13001

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3R-hydroxy-icosatrienoyl-CoA[c] => 1 H2O[c] + 1 icosatrienoyl-2-enoyl CoA[c]

Genes associated with this reaction

Pathways

  • PWY-7602, icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes): PWY-7602
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7619, juniperonate biosynthesis: PWY-7619
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7724, icosapentaenoate biosynthesis III (8-desaturase, mammals): PWY-7724
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13001&oldid=42840"