Difference between revisions of "Tiso gene 600"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoglycolate_phosphatase_2...")
(Created page with "Category:Gene == Gene Tiso_gene_600 == * right end position: ** 20173 * transcription direction: ** POSITIVE * left end position: ** 18916 * centisome position: ** 60.8016...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
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== Gene Tiso_gene_600 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 20173
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* common name:
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* transcription direction:
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** phosphoglycolate_phosphatase_2
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** POSITIVE
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** phosphoglycolate_phosphatase
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* left end position:
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** solute_carrier_family_38
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** 18916
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
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** 60.801643   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[MALTODEXGLUCOSID-RXN]]
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** 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Pi]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 2-phosphoglycolate[c] '''+''' 1 H2O[c] '''=>''' 1 glycolate[c] '''+''' 1 phosphate[c]
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* Reaction: [[RXN-14281]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18052]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_18053]]
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* Reaction: [[RXN-14282]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN-14283]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18054]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_15498]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_8723]]
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* Reaction: [[RXN-15910]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: automated-name-match
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== Pathways  ==
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* Reaction: [[RXN0-5183]]
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* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-842]]
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* [[GLYCOCAT-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=20173}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=18916}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
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{{#set: centisome position=60.801643    }}
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* UNIPROT:
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{{#set: reaction associated=MALTODEXGLUCOSID-RXN|RXN-14281|RXN-14282|RXN-14283|RXN-15910|RXN0-5183}}
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** [http://www.uniprot.org/uniprot/P40852 P40852]
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{{#set: pathway associated=PWY-842|GLYCOCAT-PWY}}
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** [http://www.uniprot.org/uniprot/P40853 P40853]
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** [http://www.uniprot.org/uniprot/P32662 P32662]
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** [http://www.uniprot.org/uniprot/P73525 P73525]
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** [http://www.uniprot.org/uniprot/O33512 O33512]
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** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoglycolate_phosphatase_2}}
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{{#set: common name=phosphoglycolate_phosphatase}}
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{{#set: common name=solute_carrier_family_38}}
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{{#set: ec number=EC-3.1.3.18}}
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{{#set: gene associated=Tiso_gene_18052|Tiso_gene_18053|Tiso_gene_18054|Tiso_gene_15498|Tiso_gene_8723}}
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{{#set: in pathway=PWY-181}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:42, 21 March 2018

Gene Tiso_gene_600

  • right end position:
    • 20173
  • transcription direction:
    • POSITIVE
  • left end position:
    • 18916
  • centisome position:
    • 60.801643
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_600&oldid=43288"