Difference between revisions of "PWY-6147"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] == * direction: ** REVERSIBLE * common name: ** bifunctional_asp...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
 
Line 1: Line 1:
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** bifunctional_aspartokinase_homoserine_dehydrogenase
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** 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
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** aspartokinase
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** homoserine_dehydrogenase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.2.4 EC-2.7.2.4]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''5''' reactions in the full pathway
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** 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[L-BETA-ASPARTYL-P]][c] '''+''' 1 [[ADP]][c]
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* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
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* With common name(s):
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** 38 associated gene(s):
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** 1 L-aspartate[c] '''+''' 1 ATP[c] '''<=>''' 1 L-aspartyl-4-phosphate[c] '''+''' 1 ADP[c]
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*** [[Tiso_gene_10760]]
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*** [[Tiso_gene_2019]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5713]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_1142]]
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* Gene: [[Tiso_gene_4345]]
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*** [[Tiso_gene_17467]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_15988]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_10288]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_8599]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_2924]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_10158]]
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* Gene: [[Tiso_gene_17057]]
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*** [[Tiso_gene_4112]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_15582]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_277]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_16712]]
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* Gene: [[Tiso_gene_13809]]
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*** [[Tiso_gene_17804]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_7067]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_19075]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_4645]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_12514]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_3667]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_6144]]
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* Gene: [[Tiso_gene_16097]]
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*** [[Tiso_gene_3314]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6277]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_8600]]
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== Pathways  ==
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*** [[Tiso_gene_13604]]
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* [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
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*** [[Tiso_gene_12636]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_2747]]
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* [[PWY-7153]], grixazone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7153 PWY-7153]
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*** [[Tiso_gene_18343]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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*** [[Tiso_gene_13784]]
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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*** [[Tiso_gene_14428]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_8601]]
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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*** [[Tiso_gene_11387]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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*** [[Tiso_gene_6767]]
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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*** [[Tiso_gene_1799]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_16176]]
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* [[PWY-6559]], spermidine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6559 PWY-6559]
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*** [[Tiso_gene_43]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_13847]]
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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*** [[Tiso_gene_13729]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[PWY-6562]], norspermidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6562 PWY-6562]
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*** [[orthology-athaliana]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[P101-PWY]], ectoine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=P101-PWY P101-PWY]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[GTP-CYCLOHYDRO-I-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[orthology]]
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*** [[Tiso_gene_12736]]
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** Source: [[orthology-athaliana]]
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** 3 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-synechocystis]]
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* [[H2NEOPTERINALDOL-RXN]]
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*** Tool: [[pantograph]]
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** 2 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_2576]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_2577]]
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* Category: [[manual]]
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** 1 reconstruction source(s) associated:
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** Source: [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 38 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_17804]]
−
** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_12636]]
−
*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_15582]]
 +
*** [[Tiso_gene_12514]]
 +
*** [[Tiso_gene_13784]]
 +
*** [[Tiso_gene_13729]]
 +
*** [[Tiso_gene_43]]
 +
*** [[Tiso_gene_277]]
 +
*** [[Tiso_gene_14428]]
 +
*** [[Tiso_gene_11387]]
 +
*** [[Tiso_gene_15988]]
 +
*** [[Tiso_gene_2019]]
 +
*** [[Tiso_gene_10288]]
 +
*** [[Tiso_gene_19075]]
 +
*** [[Tiso_gene_8600]]
 +
*** [[Tiso_gene_5713]]
 +
*** [[Tiso_gene_8601]]
 +
*** [[Tiso_gene_18343]]
 +
*** [[Tiso_gene_2924]]
 +
*** [[Tiso_gene_10158]]
 +
*** [[Tiso_gene_16176]]
 +
*** [[Tiso_gene_6277]]
 +
*** [[Tiso_gene_13847]]
 +
*** [[Tiso_gene_3667]]
 +
*** [[Tiso_gene_1142]]
 +
*** [[Tiso_gene_17467]]
 +
*** [[Tiso_gene_8599]]
 +
*** [[Tiso_gene_6144]]
 +
*** [[Tiso_gene_7067]]
 +
*** [[Tiso_gene_2747]]
 +
*** [[Tiso_gene_1799]]
 +
*** [[Tiso_gene_3314]]
 +
*** [[Tiso_gene_13604]]
 +
*** [[Tiso_gene_4112]]
 +
*** [[Tiso_gene_10760]]
 +
*** [[Tiso_gene_16712]]
 +
*** [[Tiso_gene_6767]]
 +
*** [[Tiso_gene_4645]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[H2PTERIDINEPYROPHOSPHOKIN-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_11659]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23776 23776]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6147 PWY-6147]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00480 R00480]
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{{#set: taxonomic range=TAX-33090}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P08495 P08495]
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{{#set: common name=6-hydroxymethyl-dihydropterin diphosphate biosynthesis I}}
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** [http://www.uniprot.org/uniprot/P44505 P44505]
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/P27725 P27725]
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/Q04795 Q04795]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q57991 Q57991]
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−
** [http://www.uniprot.org/uniprot/P00561 P00561]
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−
** [http://www.uniprot.org/uniprot/P00562 P00562]
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−
** [http://www.uniprot.org/uniprot/Q9PHT4 Q9PHT4]
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** [http://www.uniprot.org/uniprot/Q9JTN3 Q9JTN3]
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−
** [http://www.uniprot.org/uniprot/P53553 P53553]
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** [http://www.uniprot.org/uniprot/P10869 P10869]
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** [http://www.uniprot.org/uniprot/P08660 P08660]
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** [http://www.uniprot.org/uniprot/P26512 P26512]
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** [http://www.uniprot.org/uniprot/P37142 P37142]
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** [http://www.uniprot.org/uniprot/P41403 P41403]
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** [http://www.uniprot.org/uniprot/P0A4Z9 P0A4Z9]
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** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18]
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** [http://www.uniprot.org/uniprot/P49079 P49079]
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** [http://www.uniprot.org/uniprot/P49080 P49080]
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** [http://www.uniprot.org/uniprot/P93402 P93402]
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−
** [http://www.uniprot.org/uniprot/O81852 O81852]
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** [http://www.uniprot.org/uniprot/O63067 O63067]
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** [http://www.uniprot.org/uniprot/O65027 O65027]
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−
{{#set: direction=REVERSIBLE}}
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−
{{#set: common name=bifunctional_aspartokinase_homoserine_dehydrogenase}}
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−
{{#set: common name=aspartokinase}}
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−
{{#set: common name=homoserine_dehydrogenase}}
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−
{{#set: ec number=EC-2.7.2.4}}
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−
{{#set: gene associated=Tiso_gene_4345|Tiso_gene_17057|Tiso_gene_13809|Tiso_gene_16097}}
+
−
{{#set: in pathway=HOMOSERSYN-PWY|PWY-7153|DAPLYSINESYN-PWY|PWY-2942|PWY-2941|PWY-6559|PWY-5097|PWY-6562|P101-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:44, 21 March 2018

Pathway PWY-6147

  • taxonomic range:
  • common name:
    • 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
  • Synonym(s):

Reaction(s) found

5 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6147&oldid=43494"