Difference between revisions of "NUCLEOSIDE-DIPHOSPHATASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-phenylalanine degradation IV (mammalian, via side chain)
+
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.1.6 EC-3.6.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''4''' reactions found over '''9''' reactions in the full pathway
+
* With identifiers:
−
* [[PHENDEHYD-RXN]]
+
** 1 [[WATER]][c] '''+''' 1 [[Nucleoside-Diphosphates]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Nucleoside-Monophosphates]][c]
−
** 0 associated gene:
+
* With common name(s):
−
** 1 reconstruction source(s) associated:
+
** 1 H2O[c] '''+''' 1 a nucleoside diphosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 a nucleoside 5'-monophosphate[c]
−
*** [[annotation-in-silico_annotation]]
+
 
−
* [[RXN-10814]]
+
== Genes associated with this reaction  ==
−
** 6 associated gene(s):
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[Tiso_gene_12889]]
+
* Gene: [[Tiso_gene_12899]]
−
*** [[Tiso_gene_15680]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_13538]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_17809]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_6815]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_17718]]
+
* Gene: [[Tiso_gene_13653]]
−
** 4 reconstruction source(s) associated:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[annotation-experimental_annotation]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[manual-primary_network]]
+
* Gene: [[Tiso_gene_20236]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[orthology-esiliculosus]]
+
== Pathways  ==
−
* [[RXN-10815]]
+
== Reconstruction information  ==
−
** 3 associated gene(s):
+
* Category: [[orthology]]
−
*** [[Tiso_gene_18328]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_18976]]
+
*** Tool: [[pantograph]]
−
*** [[Tiso_gene_18977]]
+
* Category: [[annotation]]
−
** 3 reconstruction source(s) associated:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[orthology-athaliana]]
+
*** Tool: [[pathwaytools]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[RXN-10821]]
+
−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_7195]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-esiliculosus]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINE-N-PHENYLACETYLTRANSFERASE-RXN GLUTAMINE-N-PHENYLACETYLTRANSFERASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-DECARBOXYLASE-RXN PHENYLALANINE-DECARBOXYLASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10816 RXN-10816]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10817 RXN-10817]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10819 RXN-10819]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-MAP:
+
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00329 R00329]
−
{{#set: taxonomic range=TAX-33208}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=L-phenylalanine degradation IV (mammalian, via side chain)}}
+
{{#set: common name=ORF}}
−
{{#set: reaction found=4}}
+
{{#set: ec number=EC-3.6.1.6}}
−
{{#set: total reaction=9}}
+
{{#set: gene associated=Tiso_gene_12899|Tiso_gene_13653|Tiso_gene_20236}}
−
{{#set: completion rate=44.0}}
+
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:46, 21 March 2018

Reaction NUCLEOSIDE-DIPHOSPHATASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=NUCLEOSIDE-DIPHOSPHATASE-RXN&oldid=43712"