Difference between revisions of "Tiso gene 16529"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1223 RXN-1223] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3....")
(Created page with "Category:Gene == Gene Tiso_gene_16529 == * right end position: ** 1809 * transcription direction: ** POSITIVE * left end position: ** 586 * centisome position: ** 13.63107...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1223 RXN-1223] ==
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== Gene Tiso_gene_16529 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1809
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/3.13.1.1 EC-3.13.1.1]
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** POSITIVE
 +
* left end position:
 +
** 586
 +
* centisome position:
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** 13.631077   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATCD]]
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** 1 [[PROTON]][c] '''+''' 1 [[SO3]][c] '''+''' 1 [[CPD-12575]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[UDP-SULFOQUINOVOSE]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[ATCDm]]
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** 1 H+[c] '''+''' 1 sulfite[c] '''+''' 1 UDP-α-D-glucose[c] '''=>''' 1 H2O[c] '''+''' 1 UDP-α-D-sulfoquinovopyranose[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATDCD]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ATDCDm]]
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* Gene: [[Tiso_gene_2295]]
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** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ATDGD]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATDTD]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATDTDm]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATDUD]]
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** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ATDUDm]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ATGD]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ATID]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ATIDm]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ATUD]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ATUDm]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[CDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[DADPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[DCDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[DGDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* Reaction: [[DTDPKIN-RXN]]
−
* [[PWYQT-4427]], sulfoquinovosyl diacylglycerol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4427 PWYQT-4427]
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** Source: [[annotation-in-silico_annotation]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[annotation-experimental_annotation]]
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* Category: [[orthology]]
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*** Assignment: ec-number
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[DUDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[GDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
−
*** Tool: [[pantograph]]
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* Reaction: [[NDPK]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[NDPKm]]
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** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[NUCLEOSIDE-DIP-KIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14120]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-14228]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[UDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
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== Pathways associated ==
 +
* [[PWY-7210]]
 +
* [[PWY-7198]]
 +
* [[PWY-7176]]
 +
* [[PWY-7220]]
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* [[PWY-7184]]
 +
* [[PWY-7222]]
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* [[PWY-7205]]
 +
* [[PWY-7224]]
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* [[PWY-7197]]
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* [[PWY0-166]]
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* [[PWY-7227]]
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* [[PPGPPMET-PWY]]
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* [[PWY-7226]]
 +
* [[PWY-7221]]
 +
* [[PWY-6545]]
 +
* [[PWY-7187]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1809}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13197 13197]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=586}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05775 R05775]
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{{#set: centisome position=13.631077    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ATCD|ATCDm|ATDCD|ATDCDm|ATDGD|ATDTD|ATDTDm|ATDUD|ATDUDm|ATGD|ATID|ATIDm|ATUD|ATUDm|CDPKIN-RXN|DADPKIN-RXN|DCDPKIN-RXN|DGDPKIN-RXN|DTDPKIN-RXN|DUDPKIN-RXN|GDPKIN-RXN|NDPK|NDPKm|NUCLEOSIDE-DIP-KIN-RXN|RXN-14120|RXN-14228|UDPKIN-RXN}}
−
{{#set: ec number=EC-3.13.1.1}}
+
{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7176|PWY-7220|PWY-7184|PWY-7222|PWY-7205|PWY-7224|PWY-7197|PWY0-166|PWY-7227|PPGPPMET-PWY|PWY-7226|PWY-7221|PWY-6545|PWY-7187}}
−
{{#set: gene associated=Tiso_gene_2295}}
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−
{{#set: in pathway=PWYQT-4427}}
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−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 19:47, 21 March 2018

Gene Tiso_gene_16529

  • right end position:
    • 1809
  • transcription direction:
    • POSITIVE
  • left end position:
    • 586
  • centisome position:
    • 13.631077
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16529&oldid=43789"