Difference between revisions of "URA-PHOSPH-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URA-PHOSPH-RXN URA-PHOSPH-RXN] == * direction: ** REVERSIBLE * common name: ** uridine_phosphorylas...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URA-PHOSPH-RXN URA-PHOSPH-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** lipid IVA biosynthesis
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** uridine_phosphorylase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.2.3 EC-2.4.2.3]
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** [http://enzyme.expasy.org/EC/2.4.2.2 EC-2.4.2.2]
 
* Synonym(s):
 
* Synonym(s):
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** lipid-A-precursor biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''5''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[LIPIDADISACCHARIDESYNTH-RXN]]
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** 1 [[DEOXYURIDINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''+''' 1 [[URACIL]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_6736]]
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** 1 2'-deoxyuridine[c] '''+''' 1 phosphate[c] '''<=>''' 1 2-deoxy-&alpha;-D-ribose 1-phosphate[c] '''+''' 1 uracil[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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* [[TETRAACYLDISACC4KIN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_20384]]
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*** [[Tiso_gene_8779]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_8780]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7181 PWY-7181]
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* [[UDPACYLGLCNACDEACETYL-RXN]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_19583]]
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* Category: [[annotation]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pathwaytools]]
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* [[UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_2638]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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* [[UDPNACETYLGLUCOSAMACYLTRANS-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19198]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=LIPIDXSYNTHESIS-RXN LIPIDXSYNTHESIS-RXN]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22824 22824]
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{{#set: taxonomic range=TAX-33090}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02484 R02484]
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{{#set: common name=lipid IVA biosynthesis}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=lipid-A-precursor biosynthesis}}
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{{#set: common name=uridine_phosphorylase}}
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{{#set: reaction found=5}}
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{{#set: ec number=EC-2.4.2.3}}
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{{#set: total reaction=6}}
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{{#set: ec number=EC-2.4.2.2}}
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{{#set: completion rate=83.0}}
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{{#set: gene associated=Tiso_gene_20384}}
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{{#set: in pathway=PWY-7181}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:47, 21 March 2018

Reaction URA-PHOSPH-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • uridine_phosphorylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7181, pyrimidine deoxyribonucleosides degradation: PWY-7181
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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