Difference between revisions of "PWY-5754"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLU6PDEHYDROG-RXN GLU6PDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glucose-6-p...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLU6PDEHYDROG-RXN GLU6PDEHYDROG-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
−
** glucose-6-phosphate_1-dehydrogenase
+
** 4-hydroxybenzoate biosynthesis I (eukaryotes)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.1.1.49 EC-1.1.1.49]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** p-hydroxybenzoate biosynthesis I (eukaryotes)
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''2''' reactions found over '''6''' reactions in the full pathway
−
** 1 [[NADP]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c]
+
* [[4-COUMARATE--COA-LIGASE-RXN]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1 NADP+[c] '''+''' 1 D-glucopyranose 6-phosphate[c] '''=>''' 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 6-phospho D-glucono-1,5-lactone[c]
+
*** [[Tiso_gene_12275]]
−
 
+
*** [[Tiso_gene_14183]]
−
== Genes associated with this reaction  ==
+
** 2 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-athaliana]]
−
* Gene: [[Tiso_gene_16918]]
+
*** [[orthology-esiliculosus]]
−
** Source: [[annotation-in-silico_annotation]]
+
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
−
*** Assignment: EC-NUMBER
+
** 3 associated gene(s):
−
* Gene: [[Tiso_gene_14877]]
+
*** [[Tiso_gene_10680]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[Tiso_gene_6815]]
−
*** Assignment: EC-NUMBER
+
*** [[Tiso_gene_17718]]
−
** Source: [[orthology-synechocystis]]
+
** 3 reconstruction source(s) associated:
−
** Source: [[orthology-esiliculosus]]
+
*** [[manual-primary_network]]
−
== Pathways  ==
+
*** [[orthology-creinhardtii]]
−
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
+
*** [[orthology-synechocystis]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
== Reaction(s) not found ==
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+
* [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.23-RXN 3.1.2.23-RXN]
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
* [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN]
−
* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1118 RXN3O-1118]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1120 RXN3O-1120]
−
* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I: [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[GLYCOLYSIS-E-D]], superpathway of glycolysis and Entner-Doudoroff: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D]
+
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15841 15841]
+
{{#set: common name=4-hydroxybenzoate biosynthesis I (eukaryotes)}}
−
* LIGAND-RXN:
+
{{#set: common name=p-hydroxybenzoate biosynthesis I (eukaryotes)}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02736 R02736]
+
{{#set: reaction found=2}}
−
* UNIPROT:
+
{{#set: total reaction=6}}
−
** [http://www.uniprot.org/uniprot/P11411 P11411]
+
{{#set: completion rate=33.0}}
−
** [http://www.uniprot.org/uniprot/P12646 P12646]
+
−
** [http://www.uniprot.org/uniprot/Q00612 Q00612]
+
−
** [http://www.uniprot.org/uniprot/P54996 P54996]
+
−
** [http://www.uniprot.org/uniprot/P21907 P21907]
+
−
** [http://www.uniprot.org/uniprot/P54547 P54547]
+
−
** [http://www.uniprot.org/uniprot/O51581 O51581]
+
−
** [http://www.uniprot.org/uniprot/P0AC53 P0AC53]
+
−
** [http://www.uniprot.org/uniprot/P11413 P11413]
+
−
** [http://www.uniprot.org/uniprot/P29686 P29686]
+
−
** [http://www.uniprot.org/uniprot/P44311 P44311]
+
−
** [http://www.uniprot.org/uniprot/P56110 P56110]
+
−
** [http://www.uniprot.org/uniprot/Q9JTW0 Q9JTW0]
+
−
** [http://www.uniprot.org/uniprot/O25730 O25730]
+
−
** [http://www.uniprot.org/uniprot/O51240 O51240]
+
−
** [http://www.uniprot.org/uniprot/O66787 O66787]
+
−
** [http://www.uniprot.org/uniprot/P05370 P05370]
+
−
** [http://www.uniprot.org/uniprot/P11410 P11410]
+
−
** [http://www.uniprot.org/uniprot/P11412 P11412]
+
−
** [http://www.uniprot.org/uniprot/Q9R5T2 Q9R5T2]
+
−
** [http://www.uniprot.org/uniprot/P48828 P48828]
+
−
** [http://www.uniprot.org/uniprot/P37986 P37986]
+
−
** [http://www.uniprot.org/uniprot/Q8IKU0 Q8IKU0]
+
−
** [http://www.uniprot.org/uniprot/Q27741 Q27741]
+
−
** [http://www.uniprot.org/uniprot/P48826 P48826]
+
−
** [http://www.uniprot.org/uniprot/Q42919 Q42919]
+
−
** [http://www.uniprot.org/uniprot/P37830 P37830]
+
−
** [http://www.uniprot.org/uniprot/Q9FY99 Q9FY99]
+
−
** [http://www.uniprot.org/uniprot/Q49700 Q49700]
+
−
** [http://www.uniprot.org/uniprot/P73411 P73411]
+
−
** [http://www.uniprot.org/uniprot/Q8L743 Q8L743]
+
−
** [http://www.uniprot.org/uniprot/Q43793 Q43793]
+
−
** [http://www.uniprot.org/uniprot/O65856 O65856]
+
−
** [http://www.uniprot.org/uniprot/Q43839 Q43839]
+
−
** [http://www.uniprot.org/uniprot/O81978 O81978]
+
−
** [http://www.uniprot.org/uniprot/O24357 O24357]
+
−
** [http://www.uniprot.org/uniprot/O24358 O24358]
+
−
** [http://www.uniprot.org/uniprot/O24359 O24359]
+
−
** [http://www.uniprot.org/uniprot/O22404 O22404]
+
−
** [http://www.uniprot.org/uniprot/O22405 O22405]
+
−
** [http://www.uniprot.org/uniprot/O22406 O22406]
+
−
** [http://www.uniprot.org/uniprot/Q9FJI5 Q9FJI5]
+
−
** [http://www.uniprot.org/uniprot/Q9LK23 Q9LK23]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glucose-6-phosphate_1-dehydrogenase}}
+
−
{{#set: ec number=EC-1.1.1.49}}
+
−
{{#set: gene associated=Tiso_gene_16918|Tiso_gene_14877}}
+
−
{{#set: in pathway=PWY-7268|P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:48, 21 March 2018

Pathway PWY-5754

  • taxonomic range:
  • common name:
    • 4-hydroxybenzoate biosynthesis I (eukaryotes)
  • Synonym(s):
    • p-hydroxybenzoate biosynthesis I (eukaryotes)

Reaction(s) found

2 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5754&oldid=43836"