Difference between revisions of "Tiso gene 14226"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_dipho...")
(Created page with "Category:Gene == Gene Tiso_gene_14226 == * right end position: ** 9898 * transcription direction: ** NEGATIVE * left end position: ** 7775 * centisome position: ** 71.7581...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] ==
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== Gene Tiso_gene_14226 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9898
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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** nucleoside_diphosphate_kinase
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* left end position:
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** adenylate_kinase_domain-containing_protein_1
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** 7775
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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** 71.758194   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[DCDP]][c] '''=>''' 1 [[DCTP]][c] '''+''' 1 [[ADP]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 dCDP[c] '''=>''' 1 dCTP[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_9290]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17271]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17272]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_195]]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_18224]]
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* Reaction: [[RXN-12195]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_16529]]
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* Reaction: [[RXN-12196]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN0-5462]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''12''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9898}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27678 27678]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=7775}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02326 R02326]
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{{#set: centisome position=71.758194    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: common name=nucleoside_diphosphate_kinase}}
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Tiso_gene_9290|Tiso_gene_17271|Tiso_gene_17272|Tiso_gene_195|Tiso_gene_18224|Tiso_gene_16529}}
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{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7197|PWY0-166|PWY-6545}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:48, 21 March 2018

Gene Tiso_gene_14226

  • right end position:
    • 9898
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 7775
  • centisome position:
    • 71.758194
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14226&oldid=43921"