Difference between revisions of "RXN-7984"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_-nucleotidase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7984 RXN-7984] == * direction: ** LEFT-TO-RIGHT * common name: ** violaxanthin_de-epoxidase **...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7984 RXN-7984] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5_-nucleotidase
+
** violaxanthin_de-epoxidase
−
** 5_deoxy_cytosolic_type_c_protein
+
** violaxanthin_de-_chloroplast
−
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
+
−
** ORF
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** VDE
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Ribonucleoside-Monophosphates]][c] '''=>''' 1 [[Ribonucleosides]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[CPD1F-133]][c] '''+''' 1 [[ASCORBATE]][c] '''=>''' 1 [[CPD1F-131]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a ribonucleoside 5'-monophosphate[c] '''=>''' 1 a ribonucleoside[c] '''+''' 1 phosphate[c]
+
** 1 H+[c] '''+''' 1 violaxanthin[c] '''+''' 1 L-ascorbate[c] '''=>''' 1 antheraxanthin[c] '''+''' 1 H2O[c] '''+''' 1 L-dehydro-ascorbate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_13929]]
+
* Gene: [[Tiso_gene_16523]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_1275]]
−
* Gene: [[Tiso_gene_5911]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_14434]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_6640]]
+
* Gene: [[Tiso_gene_5666]]
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_14435]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6988]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_14246]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 51: Line 38:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15353 15353]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07297 R07297]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07178 R07178]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P06196 P06196]
+
−
** [http://www.uniprot.org/uniprot/P21588 P21588]
+
−
** [http://www.uniprot.org/uniprot/O34313 O34313]
+
−
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
+
−
** [http://www.uniprot.org/uniprot/O29385 O29385]
+
−
** [http://www.uniprot.org/uniprot/P44569 P44569]
+
−
** [http://www.uniprot.org/uniprot/O83142 O83142]
+
−
** [http://www.uniprot.org/uniprot/P49902 P49902]
+
−
** [http://www.uniprot.org/uniprot/P22848 P22848]
+
−
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
+
−
** [http://www.uniprot.org/uniprot/P21589 P21589]
+
−
** [http://www.uniprot.org/uniprot/P29240 P29240]
+
−
** [http://www.uniprot.org/uniprot/P07024 P07024]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5_-nucleotidase}}
+
{{#set: common name=violaxanthin_de-epoxidase}}
−
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
+
{{#set: common name=violaxanthin_de-_chloroplast}}
−
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
+
{{#set: common name=VDE}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_16523|Tiso_gene_1275|Tiso_gene_5666}}
−
{{#set: ec number=EC-3.1.3.5}}
+
{{#set: in pathway=PWY-5945}}
−
{{#set: gene associated=Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_14434|Tiso_gene_6640|Tiso_gene_14435|Tiso_gene_6988|Tiso_gene_14246}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:51, 21 March 2018

Reaction RXN-7984

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • violaxanthin_de-epoxidase
    • violaxanthin_de-_chloroplast
  • Synonym(s):
    • VDE

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5945, zeaxanthin, antheraxanthin and violaxanthin interconversion: PWY-5945
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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