Difference between revisions of "DCMP-DEAMINASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] == * smiles: ** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] ==
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* smiles:
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* direction:
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** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** (R)-3-hydroxyvaleryl-CoA
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** [http://enzyme.expasy.org/EC/3.5.4.12 EC-3.5.4.12]
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* inchi key:
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** InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J
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* molecular weight:
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** 863.619   
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* Synonym(s):
 
* Synonym(s):
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** D-β-hydroxyvaleryl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DCMP]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[AMMONIUM]][c]
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* [[RXN-12560]]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 H+[c] '''+''' 1 dCMP[c] '''=>''' 1 dUMP[c] '''+''' 1 ammonium[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_2978]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=54758578 54758578]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22924 22924]
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{{#set: smiles=CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O}}
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* LIGAND-RXN:
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{{#set: common name=(R)-3-hydroxyvaleryl-CoA}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663]
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{{#set: inchi key=InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J}}
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* UNIPROT:
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{{#set: molecular weight=863.619    }}
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** [http://www.uniprot.org/uniprot/P32321 P32321]
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{{#set: common name=D-β-hydroxyvaleryl-CoA}}
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** [http://www.uniprot.org/uniprot/P00814 P00814]
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{{#set: reversible reaction associated=RXN-12560}}
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** [http://www.uniprot.org/uniprot/P16006 P16006]
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** [http://www.uniprot.org/uniprot/P06773 P06773]
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** [http://www.uniprot.org/uniprot/O74069 O74069]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-3.5.4.12}}
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{{#set: gene associated=Tiso_gene_2978}}
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{{#set: in pathway=PWY-7210}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:55, 21 March 2018

Reaction DCMP-DEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 H+[c] + 1 dCMP[c] => 1 dUMP[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




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