Difference between revisions of "SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACSERLY-RXN ACSERLY-RXN] == * direction: ** REVERSIBLE * common name: ** cysteine_synthase ** cog00...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] == * direction: ** L...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACSERLY-RXN ACSERLY-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** cysteine_synthase
+
−
** cog0031:_cysteine_synthase
+
−
** cysteine
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
+
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ACETYLSERINE]][c] '''+''' 1 [[HS]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[ACET]][c]
+
** 1 [[SUC]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[FUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 O-acetyl-L-serine[c] '''+''' 1 hydrogen sulfide[c] '''<=>''' 1 H+[c] '''+''' 1 L-cysteine[c] '''+''' 1 acetate[c]
+
** 1 succinate[c] '''+''' 1 a ubiquinone[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 fumarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* Gene: [[Tiso_gene_819]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_7852]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-esiliculosus]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_17043]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_6110]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_2283]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_12184]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=CYSTSYN-PWY CYSTSYN-PWY]
+
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1329 PWY0-1329]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1353 PWY0-1353]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[manual]]
 
* Category: [[manual]]
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14829 14829]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13713 13713]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00897 R00897]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P31300 P31300]
+
** [http://www.uniprot.org/uniprot/P35720 P35720]
−
** [http://www.uniprot.org/uniprot/Q43153 Q43153]
+
** [http://www.uniprot.org/uniprot/Q26266 Q26266]
−
** [http://www.uniprot.org/uniprot/O67507 O67507]
+
** [http://www.uniprot.org/uniprot/P21913 P21913]
−
** [http://www.uniprot.org/uniprot/P47998 P47998]
+
** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2]
−
** [http://www.uniprot.org/uniprot/Q9V1Q3 Q9V1Q3]
+
** [http://www.uniprot.org/uniprot/P21911 P21911]
−
** [http://www.uniprot.org/uniprot/Q9RW80 Q9RW80]
+
** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1]
−
** [http://www.uniprot.org/uniprot/P56067 P56067]
+
** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67]
−
** [http://www.uniprot.org/uniprot/P63873 P63873]
+
** [http://www.uniprot.org/uniprot/P21912 P21912]
−
** [http://www.uniprot.org/uniprot/Q9CI26 Q9CI26]
+
** [http://www.uniprot.org/uniprot/P31040 P31040]
−
** [http://www.uniprot.org/uniprot/Q9ZMW6 Q9ZMW6]
+
** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3]
−
** [http://www.uniprot.org/uniprot/P45040 P45040]
+
** [http://www.uniprot.org/uniprot/P21801 P21801]
−
** [http://www.uniprot.org/uniprot/Q9WZD3 Q9WZD3]
+
** [http://www.uniprot.org/uniprot/P35721 P35721]
−
** [http://www.uniprot.org/uniprot/Q9CHF0 Q9CHF0]
+
** [http://www.uniprot.org/uniprot/P32420 P32420]
−
** [http://www.uniprot.org/uniprot/P0A534 P0A534]
+
** [http://www.uniprot.org/uniprot/Q00711 Q00711]
−
** [http://www.uniprot.org/uniprot/P71128 P71128]
+
** [http://www.uniprot.org/uniprot/P47052 P47052]
−
** [http://www.uniprot.org/uniprot/O05393 O05393]
+
** [http://www.uniprot.org/uniprot/P48932 P48932]
−
** [http://www.uniprot.org/uniprot/O34476 O34476]
+
** [http://www.uniprot.org/uniprot/P48934 P48934]
−
** [http://www.uniprot.org/uniprot/Q9JQL6 Q9JQL6]
+
** [http://www.uniprot.org/uniprot/P48935 P48935]
−
** [http://www.uniprot.org/uniprot/P38076 P38076]
+
** [http://www.uniprot.org/uniprot/P48933 P48933]
−
** [http://www.uniprot.org/uniprot/Q7M1J2 Q7M1J2]
+
** [http://www.uniprot.org/uniprot/P73723 P73723]
−
** [http://www.uniprot.org/uniprot/P29848 P29848]
+
** [http://www.uniprot.org/uniprot/P80481 P80481]
−
** [http://www.uniprot.org/uniprot/P32260 P32260]
+
** [http://www.uniprot.org/uniprot/P80482 P80482]
−
** [http://www.uniprot.org/uniprot/Q00834 Q00834]
+
** [http://www.uniprot.org/uniprot/P80480 P80480]
−
** [http://www.uniprot.org/uniprot/Q43317 Q43317]
+
** [http://www.uniprot.org/uniprot/Q9T584 Q9T584]
−
** [http://www.uniprot.org/uniprot/P47999 P47999]
+
** [http://www.uniprot.org/uniprot/P80479 P80479]
−
** [http://www.uniprot.org/uniprot/Q43726 Q43726]
+
** [http://www.uniprot.org/uniprot/P80478 P80478]
−
** [http://www.uniprot.org/uniprot/P80608 P80608]
+
** [http://www.uniprot.org/uniprot/Q09508 Q09508]
−
** [http://www.uniprot.org/uniprot/Q59447 Q59447]
+
** [http://www.uniprot.org/uniprot/Q59659 Q59659]
−
** [http://www.uniprot.org/uniprot/P53206 P53206]
+
** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7]
−
** [http://www.uniprot.org/uniprot/P37887 P37887]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/Q59529 Q59529]
+
{{#set: ec number=EC-1.3.5.1}}
−
** [http://www.uniprot.org/uniprot/P0A1E3 P0A1E3]
+
{{#set: in pathway=PWY-4302|PWY-3781|PWY-7279|PWY0-1329|PWY0-1353|PWY66-398}}
−
** [http://www.uniprot.org/uniprot/P0ABK5 P0ABK5]
+
{{#set: reconstruction category=manual}}
−
** [http://www.uniprot.org/uniprot/P16703 P16703]
+
{{#set: reconstruction source=manual-primary_network}}
−
** [http://www.uniprot.org/uniprot/O81154 O81154]
+
−
** [http://www.uniprot.org/uniprot/O81155 O81155]
+
−
** [http://www.uniprot.org/uniprot/O81523 O81523]
+
−
** [http://www.uniprot.org/uniprot/Q93244 Q93244]
+
−
** [http://www.uniprot.org/uniprot/O45679 O45679]
+
−
** [http://www.uniprot.org/uniprot/Q9S2H1 Q9S2H1]
+
−
** [http://www.uniprot.org/uniprot/P87131 P87131]
+
−
** [http://www.uniprot.org/uniprot/Q9XDU7 Q9XDU7]
+
−
** [http://www.uniprot.org/uniprot/Q9UWP0 Q9UWP0]
+
−
** [http://www.uniprot.org/uniprot/O32978 O32978]
+
−
** [http://www.uniprot.org/uniprot/Q9RAS8 Q9RAS8]
+
−
** [http://www.uniprot.org/uniprot/Q9S757 Q9S757]
+
−
** [http://www.uniprot.org/uniprot/Q9S6Z7 Q9S6Z7]
+
−
** [http://www.uniprot.org/uniprot/Q43725 Q43725]
+
−
** [http://www.uniprot.org/uniprot/Q9SMY4 Q9SMY4]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=cysteine_synthase}}
+
−
{{#set: common name=cog0031:_cysteine_synthase}}
+
−
{{#set: common name=cysteine}}
+
−
{{#set: ec number=EC-2.5.1.47}}
+
−
{{#set: gene associated=Tiso_gene_819|Tiso_gene_7852|Tiso_gene_17043|Tiso_gene_6110|Tiso_gene_2283|Tiso_gene_12184}}
+
−
{{#set: in pathway=CYSTSYN-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:58, 21 March 2018

Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 succinate[c] + 1 a ubiquinone[c] => 1 an ubiquinol[c] + 1 fumarate[c]

Genes associated with this reaction

Pathways

  • PWY-4302, aerobic respiration III (alternative oxidase pathway): PWY-4302
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3781, aerobic respiration I (cytochrome c): PWY-3781
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast): PWY-7279
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1329, succinate to cytochrome bo oxidase electron transfer: PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1353, succinate to cytochrome bd oxidase electron transfer: PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links



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