Difference between revisions of "RXN-11351"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7737 RXN-7737] == * direction: ** REVERSIBLE * common name: ** ll-diaminopimelate_chloroplastic...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11351 RXN-11351] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-lactamase * ec number:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7737 RXN-7737] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11351 RXN-11351] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ll-diaminopimelate_chloroplastic
+
** beta-lactamase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.83 EC-2.6.1.83]
+
** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
** 3 [[WATER]][c] '''+''' 2 [[CPD-12310]][c] '''=>''' 1 [[CPD-12311]][c] '''+''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 4 [[D-ALANINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 L,L-diaminopimelate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 (S)-2,3,4,5-tetrahydrodipicolinate[c] '''+''' 1 H+[c] '''+''' 1 H2O[c]
+
** 3 H2O[c] '''+''' 2 a peptidoglycan dimer (E. faeciums)[c] '''=>''' 1 a peptidoglycan with D,D cross-link (E. faecium)[c] '''+''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c] '''+''' 1 H+[c] '''+''' 4 D-alanine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_18833]]
+
* Gene: [[Tiso_gene_18870]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
+
* [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23988 23988]
+
{{#set: common name=beta-lactamase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-3.4.16.4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07613 R07613]
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{{#set: gene associated=Tiso_gene_18870}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: in pathway=PWY-6471}}
−
{{#set: common name=ll-diaminopimelate_chloroplastic}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: ec number=EC-2.6.1.83}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: gene associated=Tiso_gene_18833}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: in pathway=PWY-5097}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:58, 21 March 2018

Reaction RXN-11351

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-lactamase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 3 H2O[c] + 2 a peptidoglycan dimer (E. faeciums)[c] => 1 a peptidoglycan with D,D cross-link (E. faecium)[c] + 1 di-trans,octa-cis-undecaprenyl diphosphate[c] + 1 H+[c] + 4 D-alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6471, peptidoglycan biosynthesis IV (Enterococcus faecium): PWY-6471
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11351&oldid=44978"