Difference between revisions of "GTP-CYCLOHYDRO-II-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-D-GALACTOSE DTDP-D-GALACTOSE] == * smiles: ** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-D-GALACTOSE DTDP-D-GALACTOSE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
−
* smiles:
+
* direction:
−
** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(CO)C(O)C(O)C(O)2))O3))
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dTDP-α-D-galactose
+
** riboflavin_biosynthesis_protein
−
* inchi key:
+
** ORF
−
** InChIKey=YSYKRGRSMLTJNL-OAOVJFGZSA-L
+
* ec number:
−
* molecular weight:
+
** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
−
** 562.317   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
== Reaction(s) of unknown directionality ==
+
** 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[FORMATE]][c]
−
* [[R02984]]
+
* With common name(s):
 +
** 1 GTP[c] '''+''' 3 H2O[c] '''=>''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 2 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 formate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_14275]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_19932]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8035]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25200820 25200820]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
−
* HMDB : HMDB06876
+
* UNIPROT:
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15848 15848]
+
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/O08315 O08315]
−
** [http://www.genome.jp/dbget-bin/www_bget?C02097 C02097]
+
** [http://www.uniprot.org/uniprot/O66679 O66679]
−
{{#set: smiles=CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(CO)C(O)C(O)C(O)2))O3))}}
+
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
−
{{#set: common name=dTDP-α-D-galactose}}
+
** [http://www.uniprot.org/uniprot/O25484 O25484]
−
{{#set: inchi key=InChIKey=YSYKRGRSMLTJNL-OAOVJFGZSA-L}}
+
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
−
{{#set: molecular weight=562.317    }}
+
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
−
{{#set: reversible reaction associated=R02984}}
+
** [http://www.uniprot.org/uniprot/P43525 P43525]
 +
** [http://www.uniprot.org/uniprot/P17620 P17620]
 +
** [http://www.uniprot.org/uniprot/P38066 P38066]
 +
** [http://www.uniprot.org/uniprot/P50139 P50139]
 +
** [http://www.uniprot.org/uniprot/P74104 P74104]
 +
** [http://www.uniprot.org/uniprot/O24019 O24019]
 +
** [http://www.uniprot.org/uniprot/P51695 P51695]
 +
** [http://www.uniprot.org/uniprot/P50855 P50855]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=riboflavin_biosynthesis_protein}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-3.5.4.25}}
 +
{{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932|Tiso_gene_8035}}
 +
{{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:58, 21 March 2018

Reaction GTP-CYCLOHYDRO-II-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_biosynthesis_protein
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GTP-CYCLOHYDRO-II-RXN&oldid=45030"