Difference between revisions of "RXN-14387"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14387 RXN-14387] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14387 RXN-14387] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** arginyl-trna_synthetase
 
−
** arginine-trna_ligase
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/6.1.1.19 EC-6.1.1.19]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ARG-tRNAs]][c] '''+''' 1 [[ARG]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[CD-2S-SP-Complex]][c] '''+''' 2 [[FE+3]][c] '''=>''' 1 [[CD-SP-2Fe2S-Complex]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tRNAarg[c] '''+''' 1 L-arginine[c] '''+''' 1 ATP[c] '''=>''' 1 an L-arginyl-[tRNAarg][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
** 1 a [cysteine desulfurase]-(S-sulfanyl)2-[disordered-form scaffold protein] complex[c] '''+''' 2 Fe3+[c] '''=>''' 1 a [cysteine desulfurase]-[scaffold protein-(2Fe-2S)] complex[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_12997]]
+
* Gene: [[Tiso_gene_15502]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_16360]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 38: Line 23:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20301 20301]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P40329 P40329]
 
−
** [http://www.uniprot.org/uniprot/P35868 P35868]
 
−
** [http://www.uniprot.org/uniprot/P43832 P43832]
 
−
** [http://www.uniprot.org/uniprot/O51540 O51540]
 
−
** [http://www.uniprot.org/uniprot/O67068 O67068]
 
−
** [http://www.uniprot.org/uniprot/O59147 O59147]
 
−
** [http://www.uniprot.org/uniprot/O83803 O83803]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
 
−
** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
 
−
** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
 
−
** [http://www.uniprot.org/uniprot/P46906 P46906]
 
−
** [http://www.uniprot.org/uniprot/Q57689 Q57689]
 
−
** [http://www.uniprot.org/uniprot/O27496 O27496]
 
−
** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
 
−
** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
 
−
** [http://www.uniprot.org/uniprot/P56128 P56128]
 
−
** [http://www.uniprot.org/uniprot/P47618 P47618]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
 
−
** [http://www.uniprot.org/uniprot/Q08888 Q08888]
 
−
** [http://www.uniprot.org/uniprot/P54136 P54136]
 
−
** [http://www.uniprot.org/uniprot/P38714 P38714]
 
−
** [http://www.uniprot.org/uniprot/Q05506 Q05506]
 
−
** [http://www.uniprot.org/uniprot/P75222 P75222]
 
−
** [http://www.uniprot.org/uniprot/P11875 P11875]
 
−
** [http://www.uniprot.org/uniprot/O23247 O23247]
 
−
** [http://www.uniprot.org/uniprot/O74781 O74781]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=arginyl-trna_synthetase}}
+
{{#set: gene associated=Tiso_gene_15502}}
−
{{#set: common name=arginine-trna_ligase}}
+
{{#set: in pathway=PWY-7250}}
−
{{#set: ec number=EC-6.1.1.19}}
+
−
{{#set: gene associated=Tiso_gene_12997|Tiso_gene_16360}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:59, 21 March 2018

Reaction RXN-14387

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [cysteine desulfurase]-(S-sulfanyl)2-[disordered-form scaffold protein] complex[c] + 2 Fe3+[c] => 1 a [cysteine desulfurase]-[scaffold protein-(2Fe-2S)] complex[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7250, [2Fe-2S] iron-sulfur cluster biosynthesis: PWY-7250
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14387&oldid=45094"