Difference between revisions of "Tiso gene 12280"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.48-RXN 3.2.1.48-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** sphingomyelinase * ec...")
(Created page with "Category:Gene == Gene Tiso_gene_12280 == * right end position: ** 3075 * transcription direction: ** POSITIVE * left end position: ** 25 * centisome position: ** 0.3482379...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.48-RXN 3.2.1.48-RXN] ==
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== Gene Tiso_gene_12280 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3075
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* common name:
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* transcription direction:
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** sphingomyelinase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.2.1.26 EC-3.2.1.26]
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** 25
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** [http://enzyme.expasy.org/EC/3.2.1.48 EC-3.2.1.48]
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* centisome position:
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** 0.34823793   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GUANINE-DEAMINASE-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[SUCROSE]][c] '''=>''' 1 [[BETA-D-FRUCTOSE]][c] '''+''' 1 [[Glucopyranose]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 sucrose[c] '''=>''' 1 β-D-fructofuranose[c] '''+''' 1 D-glucopyranose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_12644]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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== Pathways  ==
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** Source: [[orthology-creinhardtii]]
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* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
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* Reaction: [[RXN-15261]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY66-373]], sucrose degradation V (sucrose α-glucosidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-373 PWY66-373]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[P164-PWY]]
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* [[PWY-6608]]
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* [[PWY-7442]]
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* [[PWY-5497]]
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* [[PWY-6606]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3075}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33795 33795]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=25}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00802 R00802]
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{{#set: centisome position=0.34823793    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=GUANINE-DEAMINASE-RXN|RXN-15261}}
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{{#set: common name=sphingomyelinase}}
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{{#set: pathway associated=P164-PWY|PWY-6608|PWY-7442|PWY-5497|PWY-6606}}
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{{#set: ec number=EC-3.2.1.26}}
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{{#set: ec number=EC-3.2.1.48}}
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{{#set: gene associated=Tiso_gene_12644}}
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{{#set: in pathway=PWY-621|PWY66-373}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 21:02, 21 March 2018

Gene Tiso_gene_12280

  • right end position:
    • 3075
  • transcription direction:
    • POSITIVE
  • left end position:
    • 25
  • centisome position:
    • 0.34823793
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12280&oldid=45391"