Difference between revisions of "OHMETHYLBILANESYN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_14583 == * right end position: ** 4916 * transcription direction: ** POSITIVE * left end position: ** 3517 * centisome position: ** 63.3009...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** hyd...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_14583 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
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* right end position:
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* direction:
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** 4916
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** hydroxymethylbilane_synthase
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* left end position:
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** uroporphyrinogen_synthase
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** 3517
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.5.1.61 EC-2.5.1.61]
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** 63.300938   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[PEPTIDYLPROLYL-ISOMERASE-RXN]]
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* With identifiers:
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** 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
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* With common name(s):
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** 4 porphobilinogen[c] '''+''' 1 H2O[c] '''=>''' 4 ammonium[c] '''+''' 1 preuroporphyrinogen[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_11630]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_14709]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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== External links  ==
 
== External links  ==
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{{#set: right end position=4916}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
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{{#set: left end position=3517}}
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* LIGAND-RXN:
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{{#set: centisome position=63.300938    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
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{{#set: reaction associated=PEPTIDYLPROLYL-ISOMERASE-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q57989 Q57989]
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** [http://www.uniprot.org/uniprot/O29026 O29026]
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** [http://www.uniprot.org/uniprot/P64336 P64336]
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** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
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** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
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** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
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** [http://www.uniprot.org/uniprot/P28464 P28464]
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** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
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** [http://www.uniprot.org/uniprot/P56140 P56140]
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** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
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** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
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** [http://www.uniprot.org/uniprot/O26960 O26960]
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** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
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** [http://www.uniprot.org/uniprot/P06983 P06983]
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** [http://www.uniprot.org/uniprot/P13446 P13446]
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** [http://www.uniprot.org/uniprot/P08397 P08397]
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** [http://www.uniprot.org/uniprot/P22907 P22907]
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** [http://www.uniprot.org/uniprot/P19356 P19356]
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** [http://www.uniprot.org/uniprot/Q43082 Q43082]
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** [http://www.uniprot.org/uniprot/P40129 P40129]
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** [http://www.uniprot.org/uniprot/P30527 P30527]
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** [http://www.uniprot.org/uniprot/P28789 P28789]
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** [http://www.uniprot.org/uniprot/Q60169 Q60169]
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** [http://www.uniprot.org/uniprot/Q43316 Q43316]
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** [http://www.uniprot.org/uniprot/Q49808 Q49808]
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** [http://www.uniprot.org/uniprot/P73660 P73660]
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** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
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** [http://www.uniprot.org/uniprot/Q09899 Q09899]
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** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=hydroxymethylbilane_synthase}}
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{{#set: common name=uroporphyrinogen_synthase}}
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{{#set: ec number=EC-2.5.1.61}}
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{{#set: gene associated=Tiso_gene_11630|Tiso_gene_14709}}
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{{#set: in pathway=PWY-5189|PWY-5188}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:03, 21 March 2018

Reaction OHMETHYLBILANESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • hydroxymethylbilane_synthase
    • uroporphyrinogen_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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