Difference between revisions of "GDPMANDEHYDRA-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMINOBUTDEHYDROG-RXN AMINOBUTDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** amino...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMINOBUTDEHYDROG-RXN AMINOBUTDEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** aminobutyraldehyde_dehydrogenase
+
** GDP-mannose 4,6-dehydratase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.19 EC-1.2.1.19]
+
** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[4-AMINO-BUTYRALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c]
+
** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 4-aminobutanal[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 4-aminobutanoate[c]
+
** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-α-D-rhamnose[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_17322]]
+
* Gene: [[Tiso_gene_13093]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13092]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PUTDEG-PWY]], putrescine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PUTDEG-PWY PUTDEG-PWY]
+
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-2]], putrescine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2 PWY-2]
+
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-3]], putrescine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3 PWY-3]
+
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19105 19105]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02549 R02549]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P49189 P49189]
+
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=aminobutyraldehyde_dehydrogenase}}
+
{{#set: common name=GDP-mannose 4,6-dehydratase}}
−
{{#set: ec number=EC-1.2.1.19}}
+
{{#set: ec number=EC-4.2.1.47}}
−
{{#set: gene associated=Tiso_gene_17322}}
+
{{#set: gene associated=Tiso_gene_13093|Tiso_gene_13092}}
−
{{#set: in pathway=PUTDEG-PWY|PWY-2|PWY-3}}
+
{{#set: in pathway=GDPRHAMSYN-PWY|PWY-66|PWY-5740|PWY-7573|PWY-5738|PWY-5739}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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