Difference between revisions of "Tiso gene 18748"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOLO-ACP-SYNTH-RXN HOLO-ACP-SYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4_-phosph...")
(Created page with "Category:Gene == Gene Tiso_gene_18748 == * right end position: ** 1984 * transcription direction: ** NEGATIVE * left end position: ** 2 * centisome position: ** 7.09471460...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOLO-ACP-SYNTH-RXN HOLO-ACP-SYNTH-RXN] ==
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== Gene Tiso_gene_18748 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1984
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* common name:
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* transcription direction:
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** 4_-phosphopantetheinyl_transferase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.7.8.7 EC-2.7.8.7]
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** 2
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* centisome position:
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** 7.09471460e-2
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.1.1.274-RXN]]
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** 1 [[apo-ACP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[PROTON]][c]
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* With common name(s):
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** 1 an apo-[acyl-carrier protein][c] '''+''' 1 coenzyme A[c] '''=>''' 1 adenosine 3',5'-bisphosphate[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_14278]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_12201]]
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* Reaction: [[ALDEHYDE-REDUCTASE-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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* Reaction: [[PYRIDOXINE-4-DEHYDROGENASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12078]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14102]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-1884]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[RXN-8772]]
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* [[PWY-6012-1]], acyl carrier protein activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6012-1 PWY-6012-1]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-6012]], acyl carrier protein metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6012 PWY-6012]
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* Reaction: [[RXN-8773]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-6693]]
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* [[PWY-882]]
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* [[PWY-7204]]
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* [[KETOGLUCONMET-PWY]]
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* [[PWY-7282]]
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* [[PWY-7165]]
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* [[PWY-5515]]
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* [[PWY-5516]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=1984}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01625 R01625]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: left end position=2}}
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** [http://www.uniprot.org/uniprot/Q9PMP8 Q9PMP8]
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{{#set: centisome position=7.09471460e-2}}
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** [http://www.uniprot.org/uniprot/P24224 P24224]
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{{#set: reaction associated=1.1.1.274-RXN|ALDEHYDE-REDUCTASE-RXN|PYRIDOXINE-4-DEHYDROGENASE-RXN|RXN-12078|RXN-14102|RXN-1884|RXN-8772|RXN-8773}}
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** [http://www.uniprot.org/uniprot/O84102 O84102]
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{{#set: pathway associated=PWY-6693|PWY-882|PWY-7204|KETOGLUCONMET-PWY|PWY-7282|PWY-7165|PWY-5515|PWY-5516}}
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** [http://www.uniprot.org/uniprot/Q9RQW2 Q9RQW2]
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** [http://www.uniprot.org/uniprot/O83800 O83800]
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** [http://www.uniprot.org/uniprot/Q9ZCX5 Q9ZCX5]
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** [http://www.uniprot.org/uniprot/Q9ZL36 Q9ZL36]
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** [http://www.uniprot.org/uniprot/O25488 O25488]
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** [http://www.uniprot.org/uniprot/P96618 P96618]
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** [http://www.uniprot.org/uniprot/O66995 O66995]
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** [http://www.uniprot.org/uniprot/P0A4W8 P0A4W8]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=4_-phosphopantetheinyl_transferase}}
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{{#set: ec number=EC-2.7.8.7}}
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{{#set: gene associated=Tiso_gene_14278|Tiso_gene_12201}}
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{{#set: in pathway=PWY-6012-1|PWY-6012}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:05, 21 March 2018

Gene Tiso_gene_18748

  • right end position:
    • 1984
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2
  • centisome position:
    • 7.09471460e-2
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18748&oldid=45853"