Difference between revisions of "RXN-11521"

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(Created page with "Category:Gene == Gene Tiso_gene_6458 == * right end position: ** 6768 * transcription direction: ** POSITIVE * left end position: ** 1597 * centisome position: ** 13.08587...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11521 RXN-11521] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
== Gene Tiso_gene_6458 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11521 RXN-11521] ==
* right end position:
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* direction:
** 6768
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** LEFT-TO-RIGHT
* transcription direction:
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** POSITIVE
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* left end position:
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** 1597
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* centisome position:
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** 13.085874   
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* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* Reaction: [[2.7.7.11-RXN]]
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* With identifiers:
** Source: [[annotation-in-silico_annotation]]
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** 1 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[7-METHYLXANTHINE]][c] '''=>''' 1 [[CPD-12481]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
*** Assignment: ec-number
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* With common name(s):
* Reaction: [[2.7.7.44-RXN]]
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** 1 H2O[c] '''+''' 1 oxygen[c] '''+''' 1 7-methylxanthine[c] '''=>''' 1 7-methylurate[c] '''+''' 1 hydrogen peroxide[c]
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
* Reaction: [[GLUC1PURIDYLTRANS-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
** Source: [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_11775]]
*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
* Reaction: [[NAG1P-URIDYLTRANS-RXN]]
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== Pathways  ==
** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6632 PWY-6632]
*** Assignment: ec-number
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** '''4''' reactions found over '''5''' reactions in the full pathway
* Reaction: [[UTPHEXPURIDYLYLTRANS-RXN]]
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== Reconstruction information  ==
** Source: [[annotation-in-silico_annotation]]
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* Category: [[orthology]]
*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
== Pathways associated ==
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*** Tool: [[pantograph]]
* [[UDPNACETYLGALSYN-PWY]]
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* [[PWY-7238]]
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* [[PWY0-1261]]
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* [[UDPNAGSYN-PWY]]
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* [[PWY-7343]]
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* [[PWY-3801]]
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* [[PWY-3821]]
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* [[PWY-7817]]
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* [[PWY-5514]]
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* [[PWY-6527]]
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* [[PWY-4841]]
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== External links  ==
 
== External links  ==
{{#set: right end position=6768}}
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* LIGAND-RXN:
{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07979 R07979]
{{#set: left end position=1597}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: centisome position=13.085874    }}
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{{#set: gene associated=Tiso_gene_11775}}
{{#set: reaction associated=2.7.7.11-RXN|2.7.7.44-RXN|GLUC1PURIDYLTRANS-RXN|NAG1P-URIDYLTRANS-RXN|UTPHEXPURIDYLYLTRANS-RXN}}
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{{#set: in pathway=PWY-6632}}
{{#set: pathway associated=UDPNACETYLGALSYN-PWY|PWY-7238|PWY0-1261|UDPNAGSYN-PWY|PWY-7343|PWY-3801|PWY-3821|PWY-7817|PWY-5514|PWY-6527|PWY-4841}}
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{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 21:06, 21 March 2018

Reaction RXN-11521

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6632, caffeine degradation IV (bacteria, via demethylation and oxidation): PWY-6632
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links