Difference between revisions of "ALANINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE--COA-LIGASE-GDP-FORMING-RXN SUCCINATE--COA-LIGASE-GDP-FORMING-RXN] == * direction: ** REV...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE--COA-LIGASE-GDP-FORMING-RXN SUCCINATE--COA-LIGASE-GDP-FORMING-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** threonine_alanine_trna_ligase_subfamily_protein
 +
** ORF
 +
** alanyl-trna_synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.4 EC-6.2.1.4]
+
** [http://enzyme.expasy.org/EC/6.1.1.7 EC-6.1.1.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
** 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 GTP[c] '''+''' 1 succinate[c] '''<=>''' 1 GDP[c] '''+''' 1 phosphate[c] '''+''' 1 succinyl-CoA[c]
+
** 1 L-alanine[c] '''+''' 1 a tRNAala[c] '''+''' 1 ATP[c] '''+''' 1 H+[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-alanyl-[tRNAala][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_11866]]
+
* Gene: [[Tiso_gene_2298]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3249]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18607]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18609]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19573]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22120 22120]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12540 12540]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00432 R00432]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q03184 Q03184]
+
** [http://www.uniprot.org/uniprot/P56452 P56452]
−
** [http://www.uniprot.org/uniprot/O08371 O08371]
+
** [http://www.uniprot.org/uniprot/O27718 O27718]
−
** [http://www.uniprot.org/uniprot/O84829 O84829]
+
** [http://www.uniprot.org/uniprot/O34526 O34526]
−
** [http://www.uniprot.org/uniprot/Q8LAD2 Q8LAD2]
+
** [http://www.uniprot.org/uniprot/P47534 P47534]
−
** [http://www.uniprot.org/uniprot/P53587 P53587]
+
** [http://www.uniprot.org/uniprot/O58035 O58035]
−
** [http://www.uniprot.org/uniprot/P53312 P53312]
+
** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
−
** [http://www.uniprot.org/uniprot/P36967 P36967]
+
** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
−
** [http://www.uniprot.org/uniprot/P13086 P13086]
+
** [http://www.uniprot.org/uniprot/Q57984 Q57984]
−
** [http://www.uniprot.org/uniprot/Q9Y436 Q9Y436]
+
** [http://www.uniprot.org/uniprot/O51238 O51238]
−
** [http://www.uniprot.org/uniprot/P68209 P68209]
+
** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/O83980 O83980]
−
{{#set: ec number=EC-6.2.1.4}}
+
** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
−
{{#set: gene associated=Tiso_gene_11866}}
+
** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
−
{{#set: in pathway=PWY66-398}}
+
** [http://www.uniprot.org/uniprot/O67323 O67323]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P49588 P49588]
 +
** [http://www.uniprot.org/uniprot/P43815 P43815]
 +
** [http://www.uniprot.org/uniprot/P50475 P50475]
 +
** [http://www.uniprot.org/uniprot/P24075 P24075]
 +
** [http://www.uniprot.org/uniprot/P27866 P27866]
 +
** [http://www.uniprot.org/uniprot/P35029 P35029]
 +
** [http://www.uniprot.org/uniprot/P40825 P40825]
 +
** [http://www.uniprot.org/uniprot/P75368 P75368]
 +
** [http://www.uniprot.org/uniprot/Q48976 Q48976]
 +
** [http://www.uniprot.org/uniprot/P00957 P00957]
 +
** [http://www.uniprot.org/uniprot/P21894 P21894]
 +
** [http://www.uniprot.org/uniprot/O50189 O50189]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=threonine_alanine_trna_ligase_subfamily_protein}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=alanyl-trna_synthetase}}
 +
{{#set: ec number=EC-6.1.1.7}}
 +
{{#set: gene associated=Tiso_gene_2298|Tiso_gene_3249|Tiso_gene_18607|Tiso_gene_18609|Tiso_gene_19573}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:07, 21 March 2018

Reaction ALANINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • threonine_alanine_trna_ligase_subfamily_protein
    • ORF
    • alanyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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