Difference between revisions of "RXN3O-4113"

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(Created page with "Category:Gene == Gene Tiso_gene_3392 == * right end position: ** 16725 * transcription direction: ** POSITIVE * left end position: ** 14616 * centisome position: ** 86.746...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-4113 RXN3O-4113] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** OR...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3392 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-4113 RXN3O-4113] ==
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* right end position:
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* direction:
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** 16725
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** polyketide_synthase
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* left end position:
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** ORF
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** 14616
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
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** 86.746994   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[3.2.1.47-RXN]]
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* With identifiers:
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** Source: [[orthology-athaliana]]
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** 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[HYDRPHENYLAC-CPD]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[CPD3O-4151]][c]
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* Reaction: [[ALPHAGALACTOSID-RXN]]
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* With common name(s):
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** 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 (4-hydroxyphenyl)acetaldehyde[c] '''=>''' 1 NAD+[c] '''+''' 1 4-tyrosol[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_7649]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_5425]]
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* Reaction: [[RXN-11501]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_6562]]
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* Reaction: [[RXN-11502]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_6563]]
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* Reaction: [[RXN-12088]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-17754]]
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* Gene: [[Tiso_gene_5424]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-17830]]
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== Pathways  ==
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* [[PWY3O-4108]], L-tyrosine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-4108 PWY3O-4108]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6802]], salidroside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6802 PWY-6802]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-6527]]
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* [[PWY0-1301]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=16725}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04304 R04304]
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{{#set: left end position=14616}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=86.746994    }}
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{{#set: common name=polyketide_synthase}}
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{{#set: reaction associated=3.2.1.47-RXN|ALPHAGALACTOSID-RXN|RXN-11501|RXN-11502|RXN-12088|RXN-17754|RXN-17830}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=PWY-6527|PWY0-1301}}
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{{#set: ec number=EC-1.1.1.1}}
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{{#set: gene associated=Tiso_gene_7649|Tiso_gene_5425|Tiso_gene_6562|Tiso_gene_6563|Tiso_gene_5424}}
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{{#set: in pathway=PWY3O-4108|PWY-6802}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:12, 21 March 2018

Reaction RXN3O-4113

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 NADH[c] + 1 (4-hydroxyphenyl)acetaldehyde[c] => 1 NAD+[c] + 1 4-tyrosol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY3O-4108, L-tyrosine degradation III: PWY3O-4108
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6802, salidroside biosynthesis: PWY-6802
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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