Difference between revisions of "Tiso gene 16754"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Gene == Gene Tiso_gene_16754 == * right end position: ** 3853 * transcription direction: ** POSITIVE * left end position: ** 2657 * centisome position: ** 64.1477...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_16754 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3853
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** structural_maintenance_of_chromosomes_protein_6
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* left end position:
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* ec number:
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** 2657
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
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* centisome position:
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** 64.14775   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3PGAREARR-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[SER-tRNAs]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 a tRNAser[c] '''+''' 1 L-serine[c] '''=>''' 1 an L-seryl-[tRNAser][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_1682]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10015]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_587]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1684]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pathwaytools]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY-1042]]
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* [[P341-PWY]]
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* [[PWY-2221]]
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* [[GLUCONEO-PWY]]
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* [[GLYCOLYSIS]]
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* [[PWY-6901]]
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* [[PWY-7218]]
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* [[P124-PWY]]
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* [[PWY-6886]]
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* [[PWY-5723]]
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* [[PWY-6142]]
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* [[PWY-5484]]
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* [[PWY-7124]]
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* [[PWY-7003]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3853}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12292 12292]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2657}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
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{{#set: centisome position=64.14775    }}
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* UNIPROT:
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{{#set: reaction associated=3PGAREARR-RXN}}
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** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
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** [http://www.uniprot.org/uniprot/O51244 O51244]
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** [http://www.uniprot.org/uniprot/O66647 O66647]
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** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
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** [http://www.uniprot.org/uniprot/Q58477 Q58477]
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** [http://www.uniprot.org/uniprot/O27194 O27194]
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** [http://www.uniprot.org/uniprot/O84734 O84734]
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** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
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** [http://www.uniprot.org/uniprot/P47251 P47251]
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** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
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** [http://www.uniprot.org/uniprot/O83653 O83653]
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** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
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** [http://www.uniprot.org/uniprot/P49591 P49591]
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** [http://www.uniprot.org/uniprot/P56458 P56458]
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** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
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** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
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** [http://www.uniprot.org/uniprot/P43833 P43833]
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** [http://www.uniprot.org/uniprot/P26636 P26636]
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** [http://www.uniprot.org/uniprot/P39919 P39919]
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** [http://www.uniprot.org/uniprot/P37464 P37464]
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** [http://www.uniprot.org/uniprot/Q39230 Q39230]
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** [http://www.uniprot.org/uniprot/P75107 P75107]
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** [http://www.uniprot.org/uniprot/P73201 P73201]
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** [http://www.uniprot.org/uniprot/O82108 O82108]
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** [http://www.uniprot.org/uniprot/O82110 O82110]
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** [http://www.uniprot.org/uniprot/O81983 O81983]
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** [http://www.uniprot.org/uniprot/O45887 O45887]
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** [http://www.uniprot.org/uniprot/O14018 O14018]
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** [http://www.uniprot.org/uniprot/P54221 P54221]
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** [http://www.uniprot.org/uniprot/P07284 P07284]
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** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: gene associated=Tiso_gene_1682|Tiso_gene_10015|Tiso_gene_587|Tiso_gene_1684}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:12, 21 March 2018

Gene Tiso_gene_16754

  • right end position:
    • 3853
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2657
  • centisome position:
    • 64.14775
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16754&oldid=46745"