Difference between revisions of "Tiso gene 3392"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFOCYS-RXN SULFOCYS-RXN] == * direction: ** REVERSIBLE * common name: ** cog0031:_cysteine_syntha...")
(Created page with "Category:Gene == Gene Tiso_gene_3392 == * right end position: ** 16725 * transcription direction: ** POSITIVE * left end position: ** 14616 * centisome position: ** 86.746...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFOCYS-RXN SULFOCYS-RXN] ==
+
== Gene Tiso_gene_3392 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 16725
−
* common name:
+
* transcription direction:
−
** cog0031:_cysteine_synthase
+
** POSITIVE
−
** cysteine_synthase
+
* left end position:
−
** cysteine
+
** 14616
−
* ec number:
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
+
** 86.746994   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3.2.1.47-RXN]]
−
** 1 [[S2O3]][c] '''+''' 1 [[ACETYLSERINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ACET]][c] '''+''' 1 [[SULFO-CYSTEINE]][c]
+
** Source: [[orthology-athaliana]]
−
* With common name(s):
+
* Reaction: [[ALPHAGALACTOSID-RXN]]
−
** 1 thiosulfate[c] '''+''' 1 O-acetyl-L-serine[c] '''<=>''' 1 H+[c] '''+''' 1 acetate[c] '''+''' 1 S-sulfo-L-cysteine[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_2283]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
−
* Gene: [[Tiso_gene_17043]]
+
** Source: [[orthology-athaliana]]
 +
* Reaction: [[RXN-11501]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6110]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
** Source: [[orthology-esiliculosus]]
+
* Reaction: [[RXN-11502]]
−
** Source: [[orthology-creinhardtii]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
* Gene: [[Tiso_gene_3732]]
+
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
* Gene: [[Tiso_gene_7852]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
** Source: [[orthology-esiliculosus]]
+
* Reaction: [[RXN-12088]]
−
** Source: [[orthology-creinhardtii]]
+
−
* Gene: [[Tiso_gene_819]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
−
** Source: [[annotation-experimental_annotation]]
+
* Reaction: [[RXN-17754]]
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_12184]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
−
** Source: [[annotation-experimental_annotation]]
+
* Reaction: [[RXN-17830]]
−
*** Assignment: EC-NUMBER
+
−
== Pathways  ==
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-6527]]
 +
* [[PWY0-1301]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=16725}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30891 30891]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=14616}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03132 R03132]
+
{{#set: centisome position=86.746994    }}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reaction associated=3.2.1.47-RXN|ALPHAGALACTOSID-RXN|RXN-11501|RXN-11502|RXN-12088|RXN-17754|RXN-17830}}
−
{{#set: common name=cog0031:_cysteine_synthase}}
+
{{#set: pathway associated=PWY-6527|PWY0-1301}}
−
{{#set: common name=cysteine_synthase}}
+
−
{{#set: common name=cysteine}}
+
−
{{#set: ec number=EC-2.5.1.47}}
+
−
{{#set: gene associated=Tiso_gene_2283|Tiso_gene_17043|Tiso_gene_6110|Tiso_gene_3732|Tiso_gene_7852|Tiso_gene_819|Tiso_gene_12184}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:12, 21 March 2018

Gene Tiso_gene_3392

  • right end position:
    • 16725
  • transcription direction:
    • POSITIVE
  • left end position:
    • 14616
  • centisome position:
    • 86.746994
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3392&oldid=46762"