Difference between revisions of "PEPSYNTH-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSINE_DIPHOSPHATE_RIBOSE ADENOSINE_DIPHOSPHATE_RIBOSE] == * smiles: ** C(C3(C(C(C(N2(C1(=C(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPSYNTH-RXN PEPSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSINE_DIPHOSPHATE_RIBOSE ADENOSINE_DIPHOSPHATE_RIBOSE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPSYNTH-RXN PEPSYNTH-RXN] ==
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* smiles:
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* direction:
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** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP(OP([O-])(=O)OCC4(C(O)C(O)C(O4)O))(=O)[O-]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** ADP-D-ribose
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** [http://enzyme.expasy.org/EC/2.7.9.2 EC-2.7.9.2]
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* inchi key:
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** InChIKey=SRNWOUGRCWSEMX-TYASJMOZSA-L
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* molecular weight:
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** 557.303   
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* Synonym(s):
 
* Synonym(s):
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** adenosine diphosphate D-ribose
 
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** adenosine 5'-(5-deoxy-D-ribofuranos-5-yl diphosphate)
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ARDP]]
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* With identifiers:
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* [[RXN0-1441]]
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** 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[3.2.1.143-RXN]]
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** 1 ATP[c] '''+''' 1 pyruvate[c] '''+''' 1 H2O[c] '''=>''' 2 H+[c] '''+''' 1 phosphate[c] '''+''' 1 AMP[c] '''+''' 1 phosphoenolpyruvate[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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== Pathways  ==
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 20762-30-5
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* RHEA:
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* BIGG : adprib
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11364 11364]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=49791958 49791958]
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** [http://www.genome.jp/dbget-bin/www_bget?R00199 R00199]
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* HMDB : HMDB01178
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P56070 P56070]
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** [http://www.genome.jp/dbget-bin/www_bget?C00301 C00301]
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** [http://www.uniprot.org/uniprot/O57830 O57830]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9ZMV4 Q9ZMV4]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57967 57967]
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** [http://www.uniprot.org/uniprot/Q9YEC5 Q9YEC5]
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* METABOLIGHTS : MTBLC57967
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** [http://www.uniprot.org/uniprot/Q57962 Q57962]
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{{#set: smiles=C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP(OP([O-])(=O)OCC4(C(O)C(O)C(O4)O))(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/O29548 O29548]
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{{#set: common name=ADP-D-ribose}}
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** [http://www.uniprot.org/uniprot/Q9V2H7 Q9V2H7]
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{{#set: inchi key=InChIKey=SRNWOUGRCWSEMX-TYASJMOZSA-L}}
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** [http://www.uniprot.org/uniprot/O27190 O27190]
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{{#set: molecular weight=557.303    }}
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** [http://www.uniprot.org/uniprot/O67899 O67899]
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{{#set: common name=adenosine diphosphate D-ribose|adenosine 5'-(5-deoxy-D-ribofuranos-5-yl diphosphate)}}
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** [http://www.uniprot.org/uniprot/Q9JVI5 Q9JVI5]
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{{#set: consumed by=ARDP|RXN0-1441}}
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** [http://www.uniprot.org/uniprot/P42850 P42850]
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{{#set: produced by=3.2.1.143-RXN}}
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** [http://www.uniprot.org/uniprot/P23538 P23538]
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** [http://www.uniprot.org/uniprot/P46893 P46893]
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** [http://www.uniprot.org/uniprot/Q55905 Q55905]
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** [http://www.uniprot.org/uniprot/O83026 O83026]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.7.9.2}}
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{{#set: in pathway=P23-PWY|PWY-5484|GLUCONEO-PWY|GLYCOLYSIS}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:12, 21 March 2018

Reaction PEPSYNTH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 pyruvate[c] + 1 H2O[c] => 2 H+[c] + 1 phosphate[c] + 1 AMP[c] + 1 phosphoenolpyruvate[c]

Genes associated with this reaction

Pathways

  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PEPSYNTH-RXN&oldid=46788"