Difference between revisions of "4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN] == * direction: ** LEFT-TO-R...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
+
** [http://enzyme.expasy.org/EC/4.1.2.52 EC-4.1.2.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[VAL]][c] '''+''' 1 [[VAL-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c]
+
** 1 [[CPD-804]][c] '''=>''' 1 [[SUCC-S-ALD]][c] '''+''' 1 [[PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-valine[c] '''+''' 1 a tRNAval[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-valyl-[tRNAval][c]
+
** 1 (4S)-4-hydroxy-2-oxoheptanedioate[c] '''=>''' 1 succinate semialdehyde[c] '''+''' 1 pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_1372]]
+
* Gene: [[Tiso_gene_13940]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_8041]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation: [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
−
* UNIPROT:
+
** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
−
** [http://www.uniprot.org/uniprot/P28350 P28350]
+
−
** [http://www.uniprot.org/uniprot/P36420 P36420]
+
−
** [http://www.uniprot.org/uniprot/P56000 P56000]
+
−
** [http://www.uniprot.org/uniprot/O51680 O51680]
+
−
** [http://www.uniprot.org/uniprot/O67411 O67411]
+
−
** [http://www.uniprot.org/uniprot/O83998 O83998]
+
−
** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
+
−
** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
+
−
** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
+
−
** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
+
−
** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
+
−
** [http://www.uniprot.org/uniprot/Q58413 Q58413]
+
−
** [http://www.uniprot.org/uniprot/P43834 P43834]
+
−
** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
+
−
** [http://www.uniprot.org/uniprot/O84304 O84304]
+
−
** [http://www.uniprot.org/uniprot/P47576 P47576]
+
−
** [http://www.uniprot.org/uniprot/Q94678 Q94678]
+
−
** [http://www.uniprot.org/uniprot/Q04462 Q04462]
+
−
** [http://www.uniprot.org/uniprot/P26640 P26640]
+
−
** [http://www.uniprot.org/uniprot/Q05873 Q05873]
+
−
** [http://www.uniprot.org/uniprot/Q26177 Q26177]
+
−
** [http://www.uniprot.org/uniprot/P75304 P75304]
+
−
** [http://www.uniprot.org/uniprot/Q49021 Q49021]
+
−
** [http://www.uniprot.org/uniprot/P11931 P11931]
+
−
** [http://www.uniprot.org/uniprot/P07806 P07806]
+
−
** [http://www.uniprot.org/uniprot/P07118 P07118]
+
−
** [http://www.uniprot.org/uniprot/O77443 O77443]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-4.1.2.52}}
−
{{#set: ec number=EC-6.1.1.9}}
+
{{#set: gene associated=Tiso_gene_13940}}
−
{{#set: gene associated=Tiso_gene_1372|Tiso_gene_8041}}
+
{{#set: in pathway=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:13, 21 March 2018

Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (4S)-4-hydroxy-2-oxoheptanedioate[c] => 1 succinate semialdehyde[c] + 1 pyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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