Difference between revisions of "Tiso gene 2802"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTPPYPHOSKIN-RXN GTPPYPHOSKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ca2+-activate...")
(Created page with "Category:Gene == Gene Tiso_gene_2802 == * right end position: ** 21724 * transcription direction: ** POSITIVE * left end position: ** 19798 * centisome position: ** 90.970...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTPPYPHOSKIN-RXN GTPPYPHOSKIN-RXN] ==
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== Gene Tiso_gene_2802 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 21724
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* common name:
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* transcription direction:
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** ca2+-activated_spot-like_protein
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** POSITIVE
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** gtp_pyrophosphokinase
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* left end position:
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* ec number:
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** 19798
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** [http://enzyme.expasy.org/EC/2.7.6.5 EC-2.7.6.5]
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* centisome position:
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** 90.97092   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-15556]]
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** 1 [[ATP]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[GDP-TP]][c] '''+''' 1 [[AMP]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 GTP[c] '''=>''' 1 pppGpp[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_16305]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_6799]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7349]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7511]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=21724}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22088 22088]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=19798}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00429 R00429]
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{{#set: centisome position=90.97092    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9CJ94 Q9CJ94]
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{{#set: pathway associated=PWY-7511}}
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** [http://www.uniprot.org/uniprot/P44644 P44644]
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** [http://www.uniprot.org/uniprot/Q9PDR3 Q9PDR3]
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** [http://www.uniprot.org/uniprot/P0AG20 P0AG20]
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** [http://www.uniprot.org/uniprot/P52560 P52560]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ca2+-activated_spot-like_protein}}
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{{#set: common name=gtp_pyrophosphokinase}}
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{{#set: ec number=EC-2.7.6.5}}
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{{#set: gene associated=Tiso_gene_16305|Tiso_gene_6799|Tiso_gene_7349}}
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{{#set: in pathway=PPGPPMET-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:15, 21 March 2018

Gene Tiso_gene_2802

  • right end position:
    • 21724
  • transcription direction:
    • POSITIVE
  • left end position:
    • 19798
  • centisome position:
    • 90.97092
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2802&oldid=47217"