Difference between revisions of "Tiso gene 16271"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyrophosphate-d...")
(Created page with "Category:Gene == Gene Tiso_gene_16271 == * right end position: ** 1497 * transcription direction: ** NEGATIVE * left end position: ** 255 * centisome position: ** 5.697051...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] ==
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== Gene Tiso_gene_16271 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1497
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* common name:
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* transcription direction:
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** pyrophosphate-dependent_phosphofructose_kinase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.7.1.11 EC-2.7.1.11]
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** 255
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* centisome position:
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** 5.697051   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3PGAREARR-RXN]]
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** 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c]
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* With common name(s):
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** 1 β-D-fructofuranose 6-phosphate[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 fructose 1,6-bisphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_5733]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_596]]
 
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** Source: [[orthology-esiliculosus]]
 
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== Pathways  ==
 
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 
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** '''9''' reactions found over '''10''' reactions in the full pathway
 
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
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** '''12''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 
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** '''5''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 
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** '''11''' reactions found over '''11''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* Category: [[orthology]]
 
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** Source: [[orthology-athaliana]]
 
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*** Tool: [[pantograph]]
 
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[R04594]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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* Category: [[manual]]
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* Reaction: [[RIBAZOLEPHOSPHAT-RXN]]
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** Source: [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-15509]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-15510]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-15511]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-15512]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-15513]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16788]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8770]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN0-5114]]
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*** Tool: [[pathwaytools]]
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** Source: [[orthology-synechocystis]]
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== Pathways associated ==
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* [[SERSYN-PWY]]
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* [[GLYCOLYSIS]]
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* [[PWY-6901]]
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* [[P124-PWY]]
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* [[COBALSYN-PWY]]
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* [[P341-PWY]]
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* [[PWY-1622]]
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* [[GLUCONEO-PWY]]
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* [[PWY-6405]]
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* [[PWY-6269]]
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* [[PWY-5509]]
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* [[PWY-5508]]
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* [[PWY66-399]]
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* [[PWY-1042]]
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* [[PWY-5723]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-5484]]
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* [[PWY-7124]]
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* [[PWY-6142]]
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* [[PWY-7003]]
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* [[PWY-2221]]
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* [[PWY-6886]]
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* [[PWY-7218]]
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* [[P122-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1497}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16109 16109]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=255}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00756 R00756]
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{{#set: centisome position=5.697051    }}
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* UNIPROT:
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{{#set: reaction associated=3PGAREARR-RXN|R04594|RIBAZOLEPHOSPHAT-RXN|RXN-15509|RXN-15510|RXN-15511|RXN-15512|RXN-15513|RXN-16788|RXN-8770|RXN0-5114}}
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** [http://www.uniprot.org/uniprot/Q7M3F7 Q7M3F7]
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{{#set: pathway associated=SERSYN-PWY|GLYCOLYSIS|PWY-6901|P124-PWY|COBALSYN-PWY|P341-PWY|PWY-1622|GLUCONEO-PWY|PWY-6405|PWY-6269|PWY-5509|PWY-5508|PWY66-399|PWY-1042|PWY-5723|ANAGLYCOLYSIS-PWY|PWY-5484|PWY-7124|PWY-6142|PWY-7003|PWY-2221|PWY-6886|PWY-7218|P122-PWY}}
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** [http://www.uniprot.org/uniprot/Q7M4J2 Q7M4J2]
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** [http://www.uniprot.org/uniprot/P12382 P12382]
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** [http://www.uniprot.org/uniprot/Q27665 Q27665]
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** [http://www.uniprot.org/uniprot/P52034 P52034]
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** [http://www.uniprot.org/uniprot/Q7M4K9 Q7M4K9]
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** [http://www.uniprot.org/uniprot/P43863 P43863]
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** [http://www.uniprot.org/uniprot/P20275 P20275]
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** [http://www.uniprot.org/uniprot/P47457 P47457]
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** [http://www.uniprot.org/uniprot/Q01813 Q01813]
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** [http://www.uniprot.org/uniprot/Q07636 Q07636]
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** [http://www.uniprot.org/uniprot/P16861 P16861]
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** [http://www.uniprot.org/uniprot/P16862 P16862]
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** [http://www.uniprot.org/uniprot/P00512 P00512]
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** [http://www.uniprot.org/uniprot/P0A796 P0A796]
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** [http://www.uniprot.org/uniprot/P06999 P06999]
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** [http://www.uniprot.org/uniprot/P08237 P08237]
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** [http://www.uniprot.org/uniprot/P00511 P00511]
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** [http://www.uniprot.org/uniprot/P70927 P70927]
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** [http://www.uniprot.org/uniprot/Q7M3F5 Q7M3F5]
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** [http://www.uniprot.org/uniprot/Q9TWY0 Q9TWY0]
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** [http://www.uniprot.org/uniprot/P30835 P30835]
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** [http://www.uniprot.org/uniprot/Q03215 Q03215]
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** [http://www.uniprot.org/uniprot/Q03216 Q03216]
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** [http://www.uniprot.org/uniprot/P80019 P80019]
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** [http://www.uniprot.org/uniprot/Q59214 Q59214]
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** [http://www.uniprot.org/uniprot/Q27705 Q27705]
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** [http://www.uniprot.org/uniprot/P75476 P75476]
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** [http://www.uniprot.org/uniprot/P72830 P72830]
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** [http://www.uniprot.org/uniprot/Q55988 Q55988]
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** [http://www.uniprot.org/uniprot/Q49084 Q49084]
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** [http://www.uniprot.org/uniprot/O08333 O08333]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=pyrophosphate-dependent_phosphofructose_kinase}}
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{{#set: ec number=EC-2.7.1.11}}
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{{#set: gene associated=Tiso_gene_5733|Tiso_gene_596}}
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{{#set: in pathway=PWY-1042|GLYCOLYSIS|PWY-7385|PWY-1861|ANAGLYCOLYSIS-PWY|PWY-5484}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:16, 21 March 2018

Gene Tiso_gene_16271

  • right end position:
    • 1497
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 255
  • centisome position:
    • 5.697051
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16271&oldid=47330"