Difference between revisions of "RXN-14883"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14883 RXN-14883] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ide...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14883 RXN-14883] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
* common name:
 
** spermidine_synthase
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[PUTRESCINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
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** 1 [[CPD-15818]][c] '''<=>''' 1 [[D-Ribopyranose]][c]
 
* With common name(s):
 
* With common name(s):
** 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 putrescine[c] '''<=>''' 1 H+[c] '''+''' 1 spermidine[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
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** 1 aldehydo-D-ribose[c] '''<=>''' 1 D-ribopyranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* Gene: [[Tiso_gene_17803]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
* Gene: [[Tiso_gene_16717]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
* Gene: [[Tiso_gene_16718]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
* Gene: [[Tiso_gene_17081]]
 
** Source: [[orthology-esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P19623 P19623]
 
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
 
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
 
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
 
** [http://www.uniprot.org/uniprot/P09158 P09158]
 
** [http://www.uniprot.org/uniprot/O48660 O48660]
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
{{#set: common name=spermidine_synthase}}
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{{#set: in pathway=}}
{{#set: ec number=EC-2.5.1.16}}
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{{#set: reconstruction category=annotation}}
{{#set: gene associated=Tiso_gene_17803|Tiso_gene_16717|Tiso_gene_16718|Tiso_gene_17081}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
+
{{#set: reconstruction tool=pathwaytools}}
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:16, 21 March 2018

Reaction RXN-14883

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 aldehydo-D-ribose[c] <=> 1 D-ribopyranose[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links