Difference between revisions of "RXN-17730"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] == * direction: ** REVERSIBLE * common name: ** dimethylglycine_dehydrogenase **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17730 RXN-17730] == * direction: ** LEFT-TO-RIGHT * common name: ** mg&lt_sup&gt2+&lt_sup&gt-de...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17730 RXN-17730] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dimethylglycine_dehydrogenase
+
** mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase
−
** aminomethyltransferase
+
** nuclear_elongation_and_deformation_protein_1
−
** glycine_cleavage_t-protein_c-terminal_barrel_domain
+
−
** sarcosine_dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.2.10 EC-2.1.2.10]
+
** [http://enzyme.expasy.org/EC/3.1.3.4 EC-3.1.3.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[1-Alkyl-2-acyl-glycerol-3-phosphate]][c] '''=>''' 1 [[1-Alkyl-2-acyl-glycerol]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 a tetrahydrofolate[c] '''<=>''' 1 ammonium[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c]
+
** 1 H2O[c] '''+''' 1 a 2-acyl-1-alkyl-sn-glycerol 3-phosphate[c] '''=>''' 1 a 2-acyl-1-alkyl-sn-glycerol[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_2717]]
+
* Gene: [[Tiso_gene_5063]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_17287]]
+
* Gene: [[Tiso_gene_7386]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_15700]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_19389]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_6882]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_14788]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
+
* [[PWY-7782]], plasmalogen biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7782 PWY-7782]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''16''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
+
{{#set: common name=mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase}}
−
* LIGAND-RXN:
+
{{#set: common name=nuclear_elongation_and_deformation_protein_1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
+
{{#set: ec number=EC-3.1.3.4}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_5063|Tiso_gene_7386}}
−
** [http://www.uniprot.org/uniprot/P25285 P25285]
+
{{#set: in pathway=PWY-7782}}
−
** [http://www.uniprot.org/uniprot/P28337 P28337]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P27248 P27248]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
+
−
** [http://www.uniprot.org/uniprot/P48728 P48728]
+
−
** [http://www.uniprot.org/uniprot/P49364 P49364]
+
−
** [http://www.uniprot.org/uniprot/P49095 P49095]
+
−
** [http://www.uniprot.org/uniprot/P49363 P49363]
+
−
** [http://www.uniprot.org/uniprot/P54260 P54260]
+
−
** [http://www.uniprot.org/uniprot/P49361 P49361]
+
−
** [http://www.uniprot.org/uniprot/P49362 P49362]
+
−
** [http://www.uniprot.org/uniprot/O49954 O49954]
+
−
** [http://www.uniprot.org/uniprot/P93256 P93256]
+
−
** [http://www.uniprot.org/uniprot/O32955 O32955]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=dimethylglycine_dehydrogenase}}
+
−
{{#set: common name=aminomethyltransferase}}
+
−
{{#set: common name=glycine_cleavage_t-protein_c-terminal_barrel_domain}}
+
−
{{#set: common name=sarcosine_dehydrogenase}}
+
−
{{#set: ec number=EC-2.1.2.10}}
+
−
{{#set: gene associated=Tiso_gene_2717|Tiso_gene_17287|Tiso_gene_15700|Tiso_gene_19389|Tiso_gene_6882|Tiso_gene_14788}}
+
−
{{#set: in pathway=GLYCLEAV-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:17, 21 March 2018

Reaction RXN-17730

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase
    • nuclear_elongation_and_deformation_protein_1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7782, plasmalogen biosynthesis: PWY-7782
    • 7 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-17730&oldid=47453"