Difference between revisions of "RXN-11841"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-9007 CPD-9007] == * smiles: ** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP(OP(=O)([O-]...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11841 RXN-11841] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridine_synthase...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-9007 CPD-9007] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11841 RXN-11841] ==
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* smiles:
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* direction:
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** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP(OP(=O)([O-])OCC5(C(O)C4(C(OP([O-])(=O)O4)O5)))([O-])=O
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** ADP ribose 1'',2''-cyclic phosphate
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** trna_pseudouridine_synthase
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* inchi key:
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** trna_pseudouridinesynthase
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** InChIKey=NPSPRYXPOGPCPM-TYASJMOZSA-K
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/5.4.99.27 EC-5.4.99.27]
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** 618.26   
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* Synonym(s):
 
* Synonym(s):
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** ADP ribose 1''-2''-cyclic phosphate
 
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** ADP ribose 1'',2''-phosphate
 
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** adenosine diphosphate ribose 1'',2''-cyclic phosphate
 
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** Appr>p
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[2.7.1.160-RXN]]
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** 1 [[tRNA-uridine13]][c] '''=>''' 1 [[tRNA-pseudouridine13]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a uridine13 in tRNA[c] '''=>''' 1 a pseudouridine13 in tRNA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_9833]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_11913]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_4021]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_4020]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_2988]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_18959]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_19622]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245989 25245989]
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{{#set: common name=trna_pseudouridine_synthase}}
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* CHEBI:
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{{#set: common name=trna_pseudouridinesynthase}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=76596 76596]
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{{#set: ec number=EC-5.4.99.27}}
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{{#set: smiles=C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP(OP(=O)([O-])OCC5(C(O)C4(C(OP([O-])(=O)O4)O5)))([O-])=O}}
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{{#set: gene associated=Tiso_gene_9833|Tiso_gene_11913|Tiso_gene_4021|Tiso_gene_4020|Tiso_gene_2988|Tiso_gene_18959|Tiso_gene_19622}}
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{{#set: common name=ADP ribose 1'',2''-cyclic phosphate}}
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{{#set: in pathway=}}
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{{#set: inchi key=InChIKey=NPSPRYXPOGPCPM-TYASJMOZSA-K}}
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{{#set: reconstruction category=annotation}}
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{{#set: molecular weight=618.26    }}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: common name=ADP ribose 1''-2''-cyclic phosphate|ADP ribose 1'',2''-phosphate|adenosine diphosphate ribose 1'',2''-cyclic phosphate|Appr>p}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: produced by=2.7.1.160-RXN}}
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Latest revision as of 20:17, 21 March 2018

Reaction RXN-11841

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trna_pseudouridine_synthase
    • trna_pseudouridinesynthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11841&oldid=47563"