Difference between revisions of "Tiso gene 5716"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] == * direction: ** REVERSIBLE * ec num...")
(Created page with "Category:Gene == Gene Tiso_gene_5716 == * right end position: ** 3268 * transcription direction: ** NEGATIVE * left end position: ** 627 * centisome position: ** 4.8119726...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] ==
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== Gene Tiso_gene_5716 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 3268
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.3.1.9 EC-2.3.1.9]
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** NEGATIVE
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* left end position:
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** 627
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* centisome position:
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** 4.8119726   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12086]]
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** 2 [[ACETYL-COA]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[ACETOACETYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 2 acetyl-CoA[c] '''<=>''' 1 coenzyme A[c] '''+''' 1 acetoacetyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_16181]]
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_15327]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-12579]]
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* Gene: [[Tiso_gene_17451]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: ec-number
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
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* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
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** Source: [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[P163-PWY]], L-lysine fermentation to acetate and butanoate: [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY]
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** '''1''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5676]], acetyl-CoA fermentation to butanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5676 PWY-5676]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7778]], 2-methylpropene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7778 PWY-7778]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7779]], methyl tert-butyl ether degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7779 PWY-7779]
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** '''2''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
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** '''8''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5741]], ethylmalonyl-CoA pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5741 PWY-5741]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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* [[PWY1-3]], polyhydroxybutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[ACETOACETATE-DEG-PWY]], acetoacetate degradation (to acetyl CoA): [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DEG-PWY ACETOACETATE-DEG-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
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** '''5''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* [[LIPAS-PWY]]
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* [[PWY-6857]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3268}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21036 21036]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=627}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00238 R00238]
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{{#set: centisome position=4.8119726    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q8CAY6 Q8CAY6]
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{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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** [http://www.uniprot.org/uniprot/P41338 P41338]
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** [http://www.uniprot.org/uniprot/P45362 P45362]
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** [http://www.uniprot.org/uniprot/Q9BWD1 Q9BWD1]
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** [http://www.uniprot.org/uniprot/P45359 P45359]
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** [http://www.uniprot.org/uniprot/P24752 P24752]
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** [http://www.uniprot.org/uniprot/Q12598 Q12598]
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** [http://www.uniprot.org/uniprot/P45369 P45369]
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** [http://www.uniprot.org/uniprot/P46707 P46707]
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** [http://www.uniprot.org/uniprot/P73825 P73825]
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** [http://www.uniprot.org/uniprot/Q43637 Q43637]
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** [http://www.uniprot.org/uniprot/Q9UQW6 Q9UQW6]
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** [http://www.uniprot.org/uniprot/Q9Z3Y4 Q9Z3Y4]
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** [http://www.uniprot.org/uniprot/P77852 P77852]
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** [http://www.uniprot.org/uniprot/Q9XD81 Q9XD81]
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** [http://www.uniprot.org/uniprot/Q9ZGI9 Q9ZGI9]
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** [http://www.uniprot.org/uniprot/Q9L8E0 Q9L8E0]
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** [http://www.uniprot.org/uniprot/P14611 P14611]
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** [http://www.uniprot.org/uniprot/P07097 P07097]
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** [http://www.uniprot.org/uniprot/P17764 P17764]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.3.1.9}}
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{{#set: gene associated=Tiso_gene_16181|Tiso_gene_15327|Tiso_gene_17451}}
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{{#set: in pathway=P162-PWY|PWY-5177|PWY-6583|P163-PWY|PWY-6883|PWY-5676|PWY-7778|PWY-7779|PWY-6588|PWY-6174|PWY-5789|PWY-6876|CENTFERM-PWY|PWY-7391|PWY-5741|PWY1-3|ACETOACETATE-DEG-PWY|PWY66-367|PWY-7216|PWY-922|PWY66-368|PWY-7401|PWY-6863|PWY-7524}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 21:18, 21 March 2018

Gene Tiso_gene_5716

  • right end position:
    • 3268
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 627
  • centisome position:
    • 4.8119726
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5716&oldid=47585"