Difference between revisions of "Tiso gene 10015"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROT-RXN DIHYDROOROT-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: *...")
(Created page with "Category:Gene == Gene Tiso_gene_10015 == * right end position: ** 6470 * transcription direction: ** NEGATIVE * left end position: ** 5829 * centisome position: ** 65.4502...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROT-RXN DIHYDROOROT-RXN] ==
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== Gene Tiso_gene_10015 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 6470
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.5.2.3 EC-3.5.2.3]
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** 5829
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* centisome position:
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** 65.45026   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-11696]]
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** 1 [[DI-H-OROTATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 (S)-dihydroorotate[c] '''+''' 1 H2O[c] '''<=>''' 1 N-carbamoyl-L-aspartate[c] '''+''' 1 H+[c]
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* Reaction: [[RXN0-2161]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[SERINE--TRNA-LIGASE-RXN]]
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* Gene: [[Tiso_gene_15379]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[VINYLACETYL-COA-DELTA-ISOMERASE-RXN]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[TRNA-CHARGING-PWY]]
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* [[PWY0-901]]
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* [[PWY-6281]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6470}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24296 24296]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5829}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01993 R01993]
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{{#set: centisome position=65.45026    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-11696|RXN0-2161|SERINE--TRNA-LIGASE-RXN|VINYLACETYL-COA-DELTA-ISOMERASE-RXN}}
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** [http://www.uniprot.org/uniprot/P08955 P08955]
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{{#set: pathway associated=TRNA-CHARGING-PWY|PWY0-901|PWY-6281}}
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** [http://www.uniprot.org/uniprot/P27708 P27708]
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** [http://www.uniprot.org/uniprot/Q91437 Q91437]
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** [http://www.uniprot.org/uniprot/Q58885 Q58885]
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** [http://www.uniprot.org/uniprot/Q9PIN6 Q9PIN6]
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** [http://www.uniprot.org/uniprot/P25995 P25995]
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** [http://www.uniprot.org/uniprot/P20051 P20051]
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** [http://www.uniprot.org/uniprot/P06204 P06204]
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** [http://www.uniprot.org/uniprot/P05020 P05020]
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** [http://www.uniprot.org/uniprot/P31301 P31301]
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** [http://www.uniprot.org/uniprot/Q9PNA0 Q9PNA0]
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** [http://www.uniprot.org/uniprot/Q9JVD6 Q9JVD6]
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** [http://www.uniprot.org/uniprot/P46538 P46538]
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** [http://www.uniprot.org/uniprot/P20054 P20054]
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** [http://www.uniprot.org/uniprot/P05990 P05990]
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** [http://www.uniprot.org/uniprot/Q06950 Q06950]
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** [http://www.uniprot.org/uniprot/P72934 P72934]
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** [http://www.uniprot.org/uniprot/P74438 P74438]
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** [http://www.uniprot.org/uniprot/O04904 O04904]
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** [http://www.uniprot.org/uniprot/P72170 P72170]
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** [http://www.uniprot.org/uniprot/O76138 O76138]
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** [http://www.uniprot.org/uniprot/O27199 O27199]
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** [http://www.uniprot.org/uniprot/P48795 P48795]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-3.5.2.3}}
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{{#set: gene associated=Tiso_gene_15379}}
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{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|orthology-creinhardtii|orthology-synechocystis|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:19, 21 March 2018

Gene Tiso_gene_10015

  • right end position:
    • 6470
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 5829
  • centisome position:
    • 65.45026
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10015&oldid=47744"